Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Cryptic diversity in the Balkan-Anatolian Cardamine acris (Brassicaceae) complex

PROVIDER: PRJNA1075285 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27936700.fastq.gz	Fastqsanger.gz
	SRR27936700_1.fastq.gz	Fastqsanger.gz
	SRR27936700_2.fastq.gz	Fastqsanger.gz
	SRR27936800.fastq.gz	Fastqsanger.gz
	SRR27936800_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1384

Similar Datasets

Cardamine barbaraeoides

Project description:Phylogenomics of Balkan Cardamine

| PRJNA687126 | ENA

Flg22 treatment of Brassicaceae and Arabidopsis thaliana accessions

Project description:We used RNA-seq to profile gene expression changes during flg22 activated pattern-triggered immunity in multiple Brassicaceae including Capsella rubella, Cardamine hirsuta and Eutrema salsugineum as well as in multiple Arabidopsis thaliana accessions. This allows comparative transcriptomics within and across species to investigate the evolution of stress-responsive transcrption changes in these species.

2021-03-11 | GSE115991 | GEO

Project description:Evolution of the Cardamine pratensis (Brassicaceae) polyploid complex in Central and southeastern Europe

| PRJNA638616 | ENA

Transcription profiling of C. kokaiensis CL, INT, and CH flowers on an Arabidopsis array

Project description:The annual cleistogamous herb Cardamine kokaiensis is an endemic plant along the Kokai River in Japan. We examined the differences in gene expression patterns among cleistogamous (CL), intermediate (INT), and chasmogamous (CH) flower by cross-species microarray analysis using an Arabidopsis thaliana Affymetrix high-density oligonucleotide microarray (GeneChip ATH1). We then discuss the molecular basis of the evolution of cleistogamy. Our results help to clarify the molecular basis of the evolution of plant mating systems that depend on environmental conditions. CITATION: Ecogenomics of cleistogamous and chasmogamous flowering: genome-wide gene expression patterns from cross-species microarray analysis in Cardamine kokaiensis (Brassicaceae); Journal of Ecology 2008; Shin-Ichi Morinaga, Atsushi J. Nagano, Saori Miyazaki, Minoru Kubo, Taku Demura, Hiroo Fukuda, Satoki Sakai, Mitsuyasu Hasebe Experiment Overall Design: gDNA hybridyzation data was used to calibration of cross-species microarray using Affymetrix ATH1. CH, INT, and CL flowers of C. kokaiensis were induced the chilling treatment before germination for 14 days or after germination for 14 or 28 days, respectively. We performed two biological replications per flower. Data analysis was conducted according to Hammond et al. (2005) that described the methods of calibration by gDNA hybridization.

2008-06-18 | E-GEOD-9799 | biostudies-arrayexpress

Cardamine

Project description:MIG-seq data set of Cardamine (Brassicaceae) in Japan

| PRJDB11142 | ENA

RNAseq of submergence response of the flood tolerant Cardamineae tribe

Project description:Pot grown plants of Arabidopsis thaliana, Cardamine hirsuta, Cardamine pratensis, Rorippa palustris and Rorippa sylvestris where completely submerged under ambient light conditions. After 24 and 48 hours the shoots were harvested for expression analysis. Differential expression analysis, taking into account unsubmerged control plants revealed that the Rorippa genus had a pronounced down regulation of the cell cycle whereas the Cardamine had an attenuated response to submergence.

2024-04-01 | E-MTAB-13910 | biostudies-arrayexpress

insect metagenome

Project description:Microbial community diversity of Bemisia tabaci cryptic species complex

| PRJNA403771 | ENA

Project description:Comparative analysis of the complete plastomes of three Cardamine in Korea and phylogenomic study of Cardamine (Brassicaceae, Brassicales)

| PRJNA1289356 | ENA

Project description:Characterization of the complete plastome sequece of Korean endemic, Cardamine glechomifolia (Brassicaceae)

| PRJNA904913 | ENA

Standing at the gateway to Europe - the genetic structure of Western Balkan populations based on autosomal and haploid markers

Project description:Here we present genome-wide high-coverage genotyping data on a panel of 75 human samples from Western Balkan region, Europe, that are used in addition to public data in studing the genetic variation of Southern Europe that was sequenced to the avwerage depth of 1X.

2014-08-22 | GSE59032 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data