Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole eye RNA sequencing of red shiner (Cyprinella lutrensis)

PROVIDER: PRJNA1076457 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27962849_1.fastq.gz	Fastqsanger.gz
	SRR27962849_2.fastq.gz	Fastqsanger.gz
	SRR27962850_1.fastq.gz	Fastqsanger.gz
	SRR27962850_2.fastq.gz	Fastqsanger.gz
	SRR27962851_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Cyprinella lutrensis

Project description:Cyprinella lutrensis

| PRJNA806518 | ENA

Project description:Gut microbial composition of the cyprinids Cyprinella lutrensis (Red shiner) and Notropis stramineus (Sand shiner): insights from wild fish populations

| PRJNA997952 | ENA

Cyprinella lutrensis

Project description:Cyprinella lutrensis overview

| PRJNA807009 | ENA

Project description:Cyprinella venusta (blacktail shiner) genome, fCypVen1

| PRJNA1095481 | ENA

Project description:Cyprinella venusta (blacktail shiner) genome, fCypVen1, sequence data

| PRJNA1139355 | ENA

Cyprinella venusta isolate:fCypVen1

Project description:Cyprinella venusta (blacktail shiner) genome, fCypVen1, haplotype 1

| PRJNA1093101 | ENA

Cyprinella venusta isolate:fCypVen1

Project description:Cyprinella venusta (blacktail shiner) genome, fCypVen1, haplotype 2

| PRJNA1093102 | ENA

Cyprinidae

Project description:Cyprinus carpio, Cyprinella lutrensis, Platygobio gracilis Raw sequence reads

| PRJNA383604 | ENA

Project description:Frog Whole Eye Transcriptome Sequencing

| PRJNA1073881 | ENA

Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System assayed by 5hmC MeDIP and by ChIP-seq for Histone Markers

Project description:Xenopus is uniquely suited for identifying core features of successful CNS axon regeneration, because parts of its CNS (e.g., eye), regenerate axons throughout life, whereas others (e.g., hindbrain) do so only as tadpoles. To aid in the interpretation of bisulfite whole genome methylation sequencing (WGBS) on juvenile frog eye after optic nerve injury, and on hindbrain samples from tadpole and juvenile frog after spinal cord injury during the peak phase of axon regeneration, we performed ChIP-seq for histone modifications associated with active gene expression (H3K4me3 & H3K27ac) and repressed gene expression (H3K27me3 & H3K9me3) on these same tissues, as well as DNA-immunoprecipitation sequencing (DIP seq) for 5-hydroxymethyl cytosine (5hmC) on eye samples during optic nerve regeneration.

2022-01-05 | GSE183350 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data