Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing of Rhinomonas reticulata S6A.

PROVIDER: PRJNA1079792 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28073808.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Rhinomonas reticulata

Project description:Rhinomonas reticulata overview

| PRJNA1327545 | ENA

Rhinomonas reticulata

Project description:Rhinomonas reticulata Transcriptome or Gene expression

| PRJNA1079712 | ENA

Rhinomonas reticulata strain:CCAP 995/2

Project description:Rhinomonas reticulata CCAP 995/2 Resequencing

| PRJNA1326706 | ENA

Citrus reticulata

Project description:citrus reticulata Transcriptome

| PRJNA393067 | ENA

Proteomics of propylbenzene metabolism by Rhinomonas reticulata S6A

Project description:Propylbenzene (PBZ) is an indispensable commodity in chemical industry, microalgae have the ability to propagate in open water by utilizing nutrients, thus contributing to the global nutrient cycle (C, N, and P). We set out to elucidate the metabolic mechanisms of n-PBA using Rhinomonas reticulata S6A, isolated from Daya Bay in our previous study (Du et al., 2023). By utilising 4D-data-independent acquisition (4D-DIA) for proteomic analysis. The outcomes of this study will contribute to the development of marine microalgae-based remediation technologies, offering a viable alternative for the treatment of PBZ contamination.

2024-03-14 | PXD050637 |

MicroRNAs in the exosome-like nanoparticles from orange juice inhibit Citrus blue mold caused by Penicillium italicum [miRNA-Seq]

Project description:Identification of miRNAs in citrus reticulata exosomes；Identification of potential target genes of exosomal miRNAs in penicillium italicum； Comparison of differentially expressed genes between citrus exosome-treatedpenicillium italicum and wild type

2022-09-26 | GSE214036 | GEO

Rhinomonas nottbecki strain:K-1855

Project description:Rhinomonas nottbecki K-1855 Resequencing

| PRJNA1323248 | ENA

Rhinomonas sp. RCC821

Project description:Rhinomonas sp. RCC 821 Resequencing

| PRJNA1323249 | ENA

Transcriptome analysis of Citrus reticulata ovule early development based on laser capture microdissection

Project description:Ovule developmental arrest is one of the early phenotypes of seed abortion. However, the molecular mechanism underlying ovule developmental arrest of citrus is still unclear. In this study, laser capture microdissection (LCM) was used to accurately divide the ovules of seedless Ponkan ‘Huagan NO.4’ (Citrus reticulata) (MT) and seeded Ponkan ‘Egan NO.1’ (Citrus reticulata) (WT) into nucellus and integument tissues. The captured tissues were used for subsequent RNA-seq. Moreover, single-molecule real-time (SMRT) sequencing was used to generate full-length transcripts of WT, which were used as reference transcripts for RNA-seq. These data can be utilized to analyse the causes of citrus seedlessness formation and the molecular regulatory network in the process of ovule abortion.

2024-09-01 | GSE183639 | GEO

Transcriptome profiling for seed abortion in Ponkan (Citrus reticulata)

Project description:Seed developmental arrest is one of the early phenotypes of seed abortion. However, the molecular mechanism underlying seed developmental arrest of citrus is still unclear. In this study, laser capture microdissection (LCM) was used to accurately divide the seeds of seedless Ponkan ‘Huagan No.4’ (Citrus reticulata) (HG) and seeded Ponkan ‘Egan No.1’ (Citrus reticulata) (EG) into nucellus and integument/seed coat tissues. The captured tissues were used for subsequent RNA-seq. Moreover, single-molecule real-time (SMRT) sequencing was used to generate full-length transcripts of EG, which were used as reference transcripts for RNA-seq. These data can be utilized to analyse the causes of citrus seedlessness formation and the molecular regulatory network in the process of seed abortion.

2023-05-08 | GSE197716 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data