Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Agricultural soils, Montana and Oklahoma

ABSTRACT: Agricultural soils, Montana and Oklahoma, marker gene sequencing

PROVIDER: PRJNA1080554 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28096300_1.fastq.gz	Fastqsanger.gz
	SRR28096300_2.fastq.gz	Fastqsanger.gz
	SRR28096400_1.fastq.gz	Fastqsanger.gz
	SRR28096400_2.fastq.gz	Fastqsanger.gz
	SRR28096301_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 468

Similar Datasets

Soils from Picher, Oklahoma, USA

Project description:Soils from Picher, Oklahoma, USA Metagenome

| PRJNA480520 | ENA

Implications of the use of organic fertilizers for Antibiotic Resistant Gene dissemination in agricultural soils and fresh food products. A plot-scale study

Project description:The spread of antibiotic resistance genes (ARG) into agricultural soils, products, and foods severely limits the use of organic fertilizers in agriculture. In this study, experimental land plots were fertilized, sown, and harvested for two consecutive agricultural cycles using either mineral or three types of organic fertilizers: sewage sludge, pig slurry, or composted organic fraction of municipal solid waste. The analysis of the relative abundances of more than 200,000 ASV (Amplicon Sequence Variants) allowed the identification of a small, but significant (<10%) overlap between soil and fertilizer microbiomes, particularly in soils sampled the same day of the harvest (post-harvest soils). Loads of clinically relevant ARG were significantly higher (up to 100 fold) in fertilized soils relative to the initial soil. The highest increases corresponded to post-harvest soils treated with organic fertilizers, and they correlated with the extend of the contribution of fertilizers to the soil microbiome. Edible products (lettuce and radish) showed low, but measurable loads of ARG (sul1 for lettuces and radish, tetM for lettuces). These loads were minimal in mineral fertilized soils, and strongly dependent on the type of fertilizer. We concluded that at least part of the observed increase on ARG loads in soils and foodstuffs were actual contributions from the fertilizer microbiomes. Thus, we propose that adequate waste management and good pharmacological and veterinarian practices may significantly reduce the potential health risk posed by the presence of ARG in agricultural soils and plant products.

2021-07-09 | GSE179685 | GEO

Illinois Agricultural Soils

Project description:Illinois Agricultural Soils Targeted loci environmental

| PRJNA529017 | ENA

Agricultural soils Microbe

Project description:Agricultural soils Microbe Raw sequence reads

| PRJNA785286 | ENA

Xuzhou fertilized agricultural soils

Project description:Xuzhou fertilized agricultural soils Raw sequence reads

| PRJNA656082 | ENA

Agricultural soils across China

Project description:Agricultural soils across China Raw sequence reads

| PRJNA1001117 | ENA

Multi-omics of incubated agricultural soils

Project description:Multi-omics of incubated agricultural soils

| PRJEB27434 | ENA

Agricultural soils with organic amendments

Project description:Agricultural soils with organic amendments (Raw sequence reads)

| PRJNA599559 | ENA

Characterization of Antibiotic Resistance and Metal Homeostasis Genes in Midwest USA Agricultural Sediments

Project description:Two-stage channels are a relatively new best management practice design used to treat nonpoint pollution. Soils collected from these channels in agricultural ditches were analyzed to elucidate the microbial functionality of the system.

2020-08-01 | GSE125810 | GEO

Methane mitigation potential of organic-amended agricultural soils

Project description:Amplicon sequencing of agricultural soils

| PRJEB75729 | ENA