Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Felis catus

ABSTRACT: Transcriptomic analysis of single/co-infections of viruses associated with feline upper respiratory tract disease in vitro

PROVIDER: PRJNA1082348 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28714300_1.fastq.gz	Fastqsanger.gz
	SRR28714300_2.fastq.gz	Fastqsanger.gz
	SRR28714301_1.fastq.gz	Fastqsanger.gz
	SRR28714301_2.fastq.gz	Fastqsanger.gz
	SRR28714302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Felis catus

Project description:Feline skin microbiota V1-3

| PRJNA580000 | ENA

Felis catus

Project description:Transcripome Analysis of 9 hour Feline Infectious Peritonitis Virus Infected Crandell Reese Feline Kidney Cells

| PRJNA214901 | ENA

Felis catus

Project description:Transcriptome Analysis of 3 Hour Feline Infectious Peritonitis Virus infected Crandell Reese Feline Kidney cells

| PRJNA214903 | ENA

Felis catus

Project description:Feline oral microbiome: FIV and gingivitis

| PRJNA580001 | ENA

Felis catus

Project description:Expression data from feline liver tissue

| PRJNA144085 | ENA

Pediatric RTIs

Project description:This series includes 278 microarrays used to detect respiratory viruses in a set of nasopharyngeal lavage specimens from children with respiratory tract infections Objective: To assess the utility of a pan-viral DNA microarray platform (Virochip) in the detection of viruses associated with pediatric respiratory tract infections. Study Design: The Virochip was compared to conventional clinical direct fluorescent antibody (DFA) and PCR-based testing for the detection of respiratory viruses in 278 consecutive nasopharyngeal aspirate samples from 222 children. Results: The Virochip was superior in performance to DFA, showing a 19% increase in the detection of 7 respiratory viruses included in standard DFA panels, and was similar to virus-specific PCR (sensitivity 85-90%, specificity 99%, PPV 94-96%, NPV 97-98%) in the detection of respiratory syncytial virus, influenza A, and rhino-/enteroviruses. The Virochip also detected viruses not routinely tested for or missed by DFA and PCR, as well as double infections and infections in critically ill patients that DFA failed to detect. Conclusions: Given its favorable sensitivity and specificity profile and greatly expanded spectrum of detection, microarray-based viral testing holds promise for clinical diagnosis of pediatric respiratory tract infections. Keywords: viral detection The series includes 278 clinical specimens

2010-05-26 | E-GEOD-10294 | biostudies-arrayexpress

Felis catus

Project description:Effect of clindamycin on feline fecal microbiota

| PRJNA338653 | ENA

Felis catus

Project description:Discovery and characterization of the feline miRNAome

| PRJNA338490 | ENA

Felis catus

Project description:Identification of feline foamy virus-derived miRNA

| PRJDB11140 | ENA

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [RNA-Seq]

Project description:Antibiotic resistance genes expressed in the upper respiratory tract of patients infected with influenza viruses were associated with the microbial community and microbial activities. Interactions between the host systemic responses to influenza infection and ARG expression highlight the importance of antibiotic resistance in viral-bacterial co-infection.

2020-03-19 | GSE126901 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data