Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacterial community dynamics on the seaweed Ulva ohnoi during a full cultivation cycle in a land-based aquaculture pond system

PROVIDER: PRJNA1088771 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28364947_1.fastq.gz	Fastqsanger.gz
	SRR28364947_2.fastq.gz	Fastqsanger.gz
	SRR28364948_1.fastq.gz	Fastqsanger.gz
	SRR28364948_2.fastq.gz	Fastqsanger.gz
	SRR28364949_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

De novo transcriptome assembly for desiccation tolerance in intertidal seaweed species Ulva lactuca

Project description:This study aimed at identification of genetic regulations for desiccation tolerance in intertidal seaweed species Ulva lactuca most commonly experienced phenomenon of intertidal communities.

2018-04-17 | GSE97868 | GEO

Transcriptome level regulations for desiccation and submergence tolerance in intertidal seaweed species Ulva lactuca

Project description:This study aimed at identification of genetic regulations for desiccation and submergence tolerance in intertidal seaweed species Ulva lactuca which arisies periodically due to tidal rhythms.

2018-04-13 | GSE97769 | GEO

Valorization of seaweed hydrolysate for production of the high-value reverse antibiotic nybomycin using metabolically engineered Streptomyces explomaris

Project description:This study develops a pipeline for high-level production of the reverse antibiotic nybomycin from three seaweed species: Himanthalia elongata, Palmaria palmata, and Ulva lactuca. Screening Streptomyces strains identified S. explomaris, a marine species, as the best host to express the nybomycin gene cluster. The accumulated low yields in artificial seawater with brown seaweed hydrolysate. Gene expression analysis revealed downregulation of precursor supply pathways and upregulation of repressors, limiting biosynthesis. Metabolic engineering addressed these bottlenecks, leading to a superior S. explomaris mutant achieving 57 mg/L, a five-fold increase as compared to reported yields. The strain effectively valorized commercial seaweed hydrolysates, highlighting marine feedstocks' potential for antibiotic production.

2025-03-10 | GSE291039 | GEO

Project description:Light-regulated interactions between Phaeobacter sp. and Ulva ohnoi: Effects on microbiome dynamics

| PRJNA1292164 | ENA

Project description:Pathogen dynamics in shrimp aquaculture pond through shotgun metagenomics

| PRJNA1176169 | ENA

Proteomic analysis of the probiotic Shewanella putrefaciens Pdp11 growing under different cultivation conditions

Project description:Assessment of in vitro postbiotic capabilities of the probiotic Shewanella putrefaciens Pdp11 growing under different cultivation conditions containing microalgae dietary supplements widely used in aquaculture

2024-03-27 | MSV000094419 | MassIVE

Assessment of in vitro postbiotic capabilities of the probiotic Vibrio proteolyticus DCF12.2 growing under different cultivation conditions containing microalgae dietary supplements widely used in aquaculture

Project description:Assessment of in vitro postbiotic capabilities of the probiotic Vibrio proteolyticus DCF12.2 growing under different cultivation conditions containing microalgae dietary supplements widely used in aquaculture

2024-07-22 | MSV000095403 | MassIVE

Metabolomic analysis of the probiotic Shewanella putrefaciens Pdp11 growing under different cultivation conditions

2024-07-22 | MSV000095402 | MassIVE

Project description:Microbiome of the green seaweed Ulva (Chlorophyta)

| PRJNA828511 | ENA

Whole-transcriptome RNA sequencing of skin reveals innate immunity differences between wild-type and yellow mutant rainbow trout

Project description:Rainbow trout (Oncorhynchus mykiss) is an important aquaculture fish species that is farmed worldwide, and it is also the most widely cultivated cold water fish in China. This species, a member of the salmonidae family, is an ideal model organism for studying the immune system in fish. Two phenotypes of rainbow trout are widely cultured; wild-type rainbow trout with black skin (WR_S) and yellow mutant rainbow trout with yellow skin (YR_S). Fish skin is an important immune organ, however, little is known about the differences in skin immunity between WR_S and YR_S in a natural flowing water pond aquaculture environment, and very few studies were conducted to investigate the ceRNA mechanism for fish skin.

2021-08-17 | GSE181974 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data