Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Resequencing 20 Wagyu cattle individuals from Russia

PROVIDER: PRJNA1105472 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28824429_1.fastq.gz	Fastqsanger.gz
	SRR28824429_2.fastq.gz	Fastqsanger.gz
	SRR28824430_1.fastq.gz	Fastqsanger.gz
	SRR28824430_2.fastq.gz	Fastqsanger.gz
	SRR28824431_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Project description:Resequencing Russian Black Pied cattle individuals from Russia

| PRJNA1217332 | ENA

RNA-seq of longissimus dorsi muscles in Japanese black (Wagyu) and Chinese Red Steppes cattle

Project description:Comparative transcriptome profile of genes differentially expressed in longissimus dorsi muscles between Japanese black (Wagyu) and Chinese Red Steppes cattle by RNA-seq

2020-11-28 | GSE161967 | GEO

A single-cell atlas of bovine skeletal muscle tissue reveals mechanisms underlying differences in quality between Wagyu and Brahman beef.

Project description:Wagyu cattle are renowned for their premium beef characterized by abundant intramuscular fat (IMF). In contrast, Brahman, a popular breed in the southern coastal area of the US, generally produces tough meat with scarce IMF. However, the mechanisms underlying the differential meat quality between the two breeds are still largely unknown. Using single-cell RNAseq (scRNAseq), we identified many tissue-resident and immune cell types in Wagyu, Brahman, and Wagyu/Brahman crossbred cattle muscle. Multiple fibro/adipogenic progenitor (FAP) subpopulations were identified, including an endomysial adipogenic subpopulation and a perimysial fibrogenic subpopulation. Further analysis comparing individual FAP subpopulations between Wagyu and Brahman identified stronger pro-adipogenic gene expression in Wagyu adipogenic FAP subpopulation and higher pro-fibrogenic gene expression in Brahman fibrogenic FAP subpopulation. Overexpression of CFD, a gene upregulated in Wagyu adipogenic FAPs, enhanced the adipogenic efficiency of FAPs. Moreover, the expression of CFD in FAPs was positively correlated with the IMF content. Interestingly, the expression of CFD was identified in human FAPs but not FAPs of mouse models of intramuscular adipogenesis, suggesting that CFD is a species-specific regulator of IMF formation. Using a mouse line that allows lineage-tracing of FAPs expressing Postn, a gene upregulated in Brahman FAPs, we found that Postn expression was specifically activated during fibrogenic but not adipogenic programming. Cell-cell communication analysis revealed robust interactions between FAPs and other cell types, further suggesting the critical role of FAPs in bovine skeletal muscle growth, development, and homeostasis.

2023-07-01 | GSE205347 | GEO

Difference in circulating microRNAs between grazing and grain-fed Japanese Black cattle

Project description:We aimed to elucidate the effects of feeding condition (indoor grain-feeding vs. grazing on pasture) on c-miRNAs in Japanese Black (JB) cattle (Wagyu). The cattle at 18 months old were divided into pasture feeding and conventional indoor grain feeding for 5 months. Microarray analysis of c-miRNAs from the plasma extracellular vesicles led to the detection of a total of 202 bovine miRNAs in the plasma, including 15 miRNAs that differed between the feeding conditions.

2017-02-09 | GSE81946 | GEO

Whole Genome Bisulfite Sequencing of Longissimus Dorsi Muscles between Japanese Black (Wagyu) and Chinese Red Steppes Cattle

Project description:We performed a comparative genome-wide methylation analysis of longissimus dorsi muscles between the Japanese Black (Wagyu) and Chinese Red Steppes cattle, which exhibit significant differences in meat quality traits. This will allow us to better understand the correlation between DNA methylation variants and meat quality traits.

2017-08-03 | GSE98818 | GEO

Project description:Resequencing 20 Altai cattle animals

| PRJNA1108671 | ENA

Project description:Oxford Nanopore sequencing of 20 Wagyu samples

| PRJNA1164319 | ENA

Project description:Whole-genome resequencing data from 20 MYDZ individuals

| PRJNA1247692 | ENA

Epigenetics of Yakutia and Central Russia regions

Project description:Lobachevsky University DNAm dataset. Whole blood DNA Methylation (EPIC) profiles from healthy samples from two regions: central Russia (131 samples) and Yakutia (114 samples) obtained in the Laboratory of System Medicine for Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Russia Dataset contains DNAm data from 245 healthy control samples from two regions: central Russia (131) and Yakutia (114). The following characteristics are available for all samples: sex, age, region. Healthy participants in the central Russia region were recruited in 2019–2022. Yakutian participants we recruited in 2022. All measurements were performed at the Laboratory of System Medicine for Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Russia.

2023-12-14 | GSE234461 | GEO

NGS_Schwannomatosis_2012

Project description:Targeted resequencing of chromosome 22 in schwannomatosis individuals

2013-11-12 | E-MTAB-1574 | biostudies-arrayexpress