Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Trichinella murrelli isolate gray fox Pennsylvania

PROVIDER: PRJNA1107115 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28871507_1.fastq.gz	Fastqsanger.gz
	SRR28871507_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Urocyon cinereoargenteus

Project description:Whole genome sequencing of gray fox

| PRJNA966176 | ENA

Project description:Trichinella in red foxes from Pennsylvania

| PRJNA1141537 | ENA

Gray and Island Fox

Project description:Gray fox (Urocyon cinereoargenteus) and island fox (Urocyon littoralis) Raw sequence reads

| PRJNA478450 | ENA

Trichinella

Project description:Trichinella pseudospiralis isolate:ISS13 and Trichinella spiralis isolate:ISS534 genomes sequencing

| PRJNA1089635 | ENA

Urocyon

Project description:Gray and island fox (Urocyon) whole genome raw sequence reads

| PRJNA312115 | ENA

Project description:Genotyping-by-sequencing of gray fox and other canid lineages

| PRJNA938958 | ENA

WGS data to conduct phylogenetic analysis in Trichinella

Project description:To reveal the correlation between epigenomic diversity and genomic SNVs, we first identified SNPs between T4 with other eleven Trichinella species. In total, we obtained 5,395,250 common SNVs across the twelve Trichinella species.

2021-06-01 | GSE169404 | GEO

Trichinella spiralis isolate:ISS3

Project description:Trichinella spiralis isolate:ISS3 Genome sequencing

| PRJNA1494207 | ENA

Trichinella murrelli isolate:ISS35

Project description:Trichinella murrelli isolate:ISS35 Genome sequencing and assembly

| PRJNA296806 | ENA

[E-MTAB-189] Genomewide Analysis of Histone Modifications in Normal Human Islets

Project description:This experiment used ChIP-seq technology to create a genome-wide profile of histone marks in normal human pancreatic islets. In the current work we analyzed two histone marks associated with gene expression (H3K4me3, H3K4me1) and marks associated with gene repression (H3K27me3). Each mark was anayzed using samples obtained from four donors (n=4). Chromatin Immunoprecipitations (ChIPs) for histone marks were performed using specific anti-histone antibodies. Enrichment of each sample was calulated with respect to its individual input using qPCR. Samples were sequenced with Solexa and sequenced DNA from both Input (n=4) and ChIP (n = 4) samples were aligned to the NCBI Genome Build 36.1 Hg18 to determine regions that were enriched for binding by modified histones. ArrayExpress Release Date: 2010-02-17 Publication Title: Genome-wide analysis of histone modifications in human pancreatic islets Publication Author List: Bhandare R, Schug J, Le Lay J, Fox A, Smirnova O, Liu C, Naji A, Kaestner KH Person Roles: submitter Person Last Name: Bhandare Person First Name: Reena Person Email: bhandare@mail.med.upenn.edu Person Phone: Person Address: 771 Clinical Research Building, 415 Curie Blvd, Philadelphia, PA, 19104 Person Affiliation: Department of Genetics, University of Pennsylvania

2011-02-05 | GSE25126 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data