Project description:Primary biliary cholangitis (PBC), primary sclerosing cholangitis (PSC), and inflammatory bowel diseases (IBDs), including Crohn’s disease (CD) and ulcerative colitis (UC), are heterogeneous chronic autoimmune diseases that may share underlying pathogenic mechanisms. Herein, we compared simultaneously analyzed blood transcriptomes from patients with PBC, PSC, and IBD.
Project description:Mucosal pinch biopsies from ascending, transverse, descending colon and rectum were obtained from ulcerative colitis (UC) and primary sclerosing cholangitis concomitant with colitis (PSC-UC) patients during routine endoscopies and subjected to 5' single-cell RNA sequencing
Project description:Background: Primary sclerosing cholangitis (PSC) is an autoimmune, cholestatic liver disease characterized by inflammation and fibrosis surrounding interlobular bile ducts. The cellular composition and cell-cell-communications driving periductal fibrosis remain ill defined.
Project description:Mucosal pinch biopsies from ascending, transverse, descending colon and rectum were obtained from ulcerative colitis (UC) and primary sclerosing cholangitis concomitant with colitis (PSC-UC) patients during routine endoscopies and subjected to 5' single-cell RNA sequencing with V(D)J TCR analysis
Project description:Mucosal pinch biopsies from ascending, transverse, descending colon and rectum were obtained from ulcerative colitis (UC) and primary sclerosing cholangitis concomitant with colitis (PSC-UC) patients during routine endoscopies and subjected to 5' single-cell RNA sequencing with V(D)J BCR analysis
Project description:Mucosal pinch biopsies from ascending, transverse, descending colon and rectum were obtained from ulcerative colitis (UC), primary sclerosing cholangitis concomitant with colitis (PSC-UC) and healthy control patients during routine endoscopies and cryopreserved. Biopsies were then thawed, digested and subjected to 5' single-cell RNA sequencing with V(D)J TCR analysis.
Project description:Mucosal pinch biopsies from ascending, transverse, descending colon and rectum were obtained from ulcerative colitis (UC), primary sclerosing cholangitis concomitant with colitis (PSC-UC) and healthy control patients during routine endoscopies and cryopreserved. Biopsies were then thawed, digested and subjected to 5' single-cell RNA sequencing with V(D)J BCR analysis
Project description:Single cell sequencing of frozen mucosal pinch biopsies from four colonic regions of patients with ulcerative colitis and primary sclerosing cholangitis concomitant with colitis, as well as one healthy control. Pinch biopsies from each region were thawed, digested and pooled with 3 other donor biopsies and subjected to 5' 10x Chromium Next GEM cell RNA sequencing.
