Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Soil in mixed plantation(ITS)

PROVIDER: PRJNA1108599 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28926500_1.fastq.gz	Fastqsanger.gz
	SRR28926500_2.fastq.gz	Fastqsanger.gz
	SRR28926501_1.fastq.gz	Fastqsanger.gz
	SRR28926501_2.fastq.gz	Fastqsanger.gz
	SRR28926502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 180

Similar Datasets

Project description:Soil in mixed plantation

| PRJNA1108489 | ENA

Project description:Chilean Mixed Forest Plantation Soil Samples

| PRJNA1195891 | ENA

Effect of biogas slurry combined with biochar on soil microbial function gene

Project description:The functional diversity of soil microbial communities was explored for a poplar plantation, which was treated solely with biogas slurry, or combined with biochar at different fertilization intensities over several years.

2020-03-30 | GSE133800 | GEO

Project description:Mixed plantation in NE China-July

| PRJNA582874 | ENA

Expression of lignin-degrading enzymes in soils using targeted microarrays

Project description:Microarrays have become established tools for describing microbial systems, however the assessment of expression profiles for environmental microbial communities still presents unique challenges. Notably, the concentration of particular transcripts are likely very dilute relative to the pool of total RNA, and PCR-based amplification strategies are vulnerable to amplification biases and the appropriate primer selection. Thus, we apply a signal amplification approach, rather than template amplification, to analyze the expression of selected lignin-degrading enzymes in soil. Controls in the form of known amplicons and cDNA from Phanerochaete chrysosporium were included and mixed with the soil cDNA both before and after the signal amplification in order to assess the dynamic range of the microarray. We demonstrate that restored prairie soil expresses a diverse range of lignin-degrading enzymes following incubation with lignin substrate, while farmed agricultural soil does not. The mixed additions of control cDNA with soil cDNA indicate that the mixed biomass in the soil does interfere with low abundance transcript changes, nevertheless our microarray approach consistently reports the most robust signals. Keywords: comparative analysis, microbial ecology, soil microbial communities

2009-06-01 | GSE13977 | GEO

monoculture and mixed plantation

Project description:monoculture and mixed plantation Raw sequence reads

| PRJNA1243553 | ENA

Project description:Conversion of mixed plantation to pinus plantation reduces the stability by regulating microbial communities

| PRJNA1170243 | ENA

Project description:Plantation soil ITS sequences

| PRJNA966771 | ENA

Project description:Tea plantation soil microorganisms

| PRJNA881081 | ENA

tea plantation soil

Project description:tea plantation soil Assembly