Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: CRISPRi screen & sspA

PROVIDER: PRJNA1109382 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28966900.fastq.gz	Fastqsanger.gz
	SRR28966901.fastq.gz	Fastqsanger.gz
	SRR28966902.fastq.gz	Fastqsanger.gz
	SRR28966903.fastq.gz	Fastqsanger.gz
	SRR28966904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 103

Similar Datasets

Project description:CRISPRi screen and whole genome sequencing

| PRJEB84063 | ENA

Mycobacterium tuberculosis H37Rv

Project description:Rv3645 palmitic acid CRISPRi suppressor screen

| PRJNA814682 | ENA

CRISPRi screen of prostate cancer associated risk cis-regulatory elements [CRISPRi]

Project description:CRISPRi screen of prostate cancer associated risk cis-regulatory elements [CRISPRi]

| PRJNA598432 | ENA

Genome-wide CRISPRi screen for myriocin sensitivity

Project description:Genome-wide CRISPRi screen for myriocin sensitivity

| PRJNA644921 | ENA

CRISPRi/a screen of doxorubicin induced cardiotoxicity

Project description:CRISPRi/a screen of doxorubicin induced cardiotoxicity

| PRJNA1155211 | ENA

BRD2 inhibition blocks SARS-CoV-2 infection by reducing transcription of the host cell receptor ACE2

Project description:We performed RNA sequencing of Calu-3 cells after treatment with the BET-domain inhibitors JQ-1 and ABBV-744 as well as BRD2 CRISPRi knockdown. We also included CRISPRi knockdown of two other validated hit genes from our screen, COMP and ACE2.

2021-01-19 | GSE165025 | GEO

Bioinformatics and single-cell CRISPRi-based screen reveals effector genes and implicates multi-tissue etiology for BMD [ATAC-seq]

Project description:To nominate identify tissues relevant to the etiology of bone mineral density we generated ATAC-seq in pediatric hMSC-osteoblasts, hFOB 1.19 cells (hFOBs), osteoclasts, and primary chondrocytes. Leveraging the results of this experiment, we designed a CRISPRi screen in hFOBs with scRNA-seq expression read out. The targets selected for the screen were informed by newly generated Capture-C and bulk RNA-seq from hFOBs.

2024-04-17 | GSE261280 | GEO

Project description:CRISPRi screen of galvanotaxis in dHL-60 neutrophils

| PRJNA1147270 | ENA

Distinct immunomodulatory pathways mediate radiotherapy response in malignant peripheral nerve sheath tumors [sgRNA library]

Project description:We performed a genome-wide CRISPRi screen to identify potential contributors to radioresistance in the JH02.2 malignant peripheral nerve sheath tumor (MPNST) cell line.

2025-11-22 | GSE289111 | GEO

Epigenetics CRISPRi screen in mouse neuronal progenitor cells (NPCs)

Project description:This dataset examined the epigenetic gene effect on mouse NPCs with Upf2 gene knockout (KO). The sgRNA sequencing results form the epigenetics CRISPRi screen sample are reported.

2024-11-06 | GSE217735 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data