Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: A genome-based investigation of the Priestia species isolated from anthrax endemic regions in KNP

PROVIDER: PRJNA1111811 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29036616_1.fastq.gz	Fastqsanger.gz
	SRR29036616_2.fastq.gz	Fastqsanger.gz
	SRR29036617_1.fastq.gz	Fastqsanger.gz
	SRR29036617_2.fastq.gz	Fastqsanger.gz
	SRR29036618_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Project description:Genome analysis of Priestia species isolated from anthrax endemic region in South Africa

| PRJNA1084826 | ENA

Venom proteome of Pakistani Bungarus sindanus (Sind krait)

Project description:Venom proteome investigation of Bungarus sindanus (Sind krait), an endemic krait species distributed mainly in the Sindh Province of Pakistan.

2019-06-12 | PXD014239 |

CGH profiling of Bacillus cereus isolates from the CDC historical strain collection

2009-11-25 | GSE19125 | GEO

Project description:Investigation of an anthrax outbreak in Switzerland

| PRJNA454788 | ENA

Isolation and characterization of two recently isolated Novosphingobium oxfordensis sp. nov. and Novosphingobium mississippiensis sp. nov. strains from soil, with LCMS and genome-based investigation of their glycosphingolipid productions

Project description:Isolation and characterization of two recently isolated Novosphingobium oxfordensis sp. nov. and Novosphingobium mississippiensis sp. nov. strains from soil, with LCMS and genome-based investigation of their glycosphingolipid productions

2024-07-03 | MSV000095235 | MassIVE

Transcriptional characterization of bacteria-fungi interaction between Priestia endophytica FH5 and phytopathogen Rhizoctonia solani

Project description:Priestia endophytica FH5, which was isolated from healthy tomato rhizosphere soil, had biological activity against a variety of plant diseases, including R. solani. We isolated the chemicals generated by strain FH5 to better understand the interaction between strain FH5 and R. solani. A transcriptome study of strain FH5 with and without R. solani exposure was also performed. In response to the fungal pathogen R. solani, strain FH5 changed genes linked to amino acid transport, carbohydrate transport, energy generation and conversion, and inorganic ion transport and metabolism, according to our findings.

2021-07-09 | GSE179605 | GEO

Baikal sponges

Project description:Investigation of endemic baikalian sponge microbiome

| PRJEB28717 | ENA

Lineage-specific gene duplication and loss in human and great ape evolution

Project description:Given that gene duplication is a major driving force of evolutionary change and the key mechanism underlying the emergence of new genes and biological processes, this study sought to use a novel genome-wide approach to identify genes that have undergone lineage-specific duplications or contractions among several hominoid lineages. Interspecies cDNA array-based comparative genomic hybridization was used to individually compare copy number variation for 39,711 cDNAs, representing 29,619 human genes, across five hominoid species, including human. We identified 1,005 genes, either as isolated genes or in clusters positionally biased toward rearrangement-prone genomic regions, that produced relative hybridization signals unique to one or more of the hominoid lineages. Measured as a function of the evolutionary age of each lineage, genes showing copy number expansions were most pronounced in human (134) and include a number of genes thought to be involved in the structure and function of the brain. This work represents, to our knowledge, the first genome-wide gene-based survey of gene duplication across hominoid species. The genes identified here likely represent a significant majority of the major gene copy number changes that have occurred over the past 15 million years of human and great ape evolution and are likely to underlie some of the key phenotypic characteristics that distinguish these species. A species experiment design type assays differences between distinct species. Keywords: species_design

2006-01-06 | GSE3980 | GEO

CGH profiling of Bacillus cereus isolates from the CDC historical strain collection

Project description:The goal of this study is the discovery of (a) meaningful phylogenomic relationships among members of this B. cereus/B. anthracis group, and (b) reliable gene-phenotype associations, e.g. recognition of links between genomic traits and the ability of certain strains to cause various forms of disease. We also tried to elucidate genome evolution aspects that may lead to the emergence of variants that are capable (or have the potential) of causing anthrax-like disease. This large-scale comparative genomics approach is unprecedented for this taxonomic group. Dr. A. Hoffmaster (CDC) provided the PFGRC with 73 B. cereus and B. anthracis isolates from the CDC culture collection. Of these, 27 were isolated from patients with severe or systemic disease; ten isolates of this group were obtained from patients (welding factory workers) with anthrax-like disease or from the environment near their workplace. Another set of 26 represented isolates from food-born illnesses. Of the 26 gastrointestinal disease isolates (GIDI), 10 were obtained from patients with diarrhea, whereas another set of 10 had been shown to harbor the emetic (vomit) toxin gene by PCR. The rest of the group consisted of 20 isolates with various phenotypes. All strains were screened for their genomic content using the B. cereus/B. anthracis species microarray. Seventy-three query strains were investigated in this study, with each query strain hybridized against the reference strain, Sterne. Dye-swap experiments were performed with all the 73 strains on both chipA and chipB of the microarray, for a total of four or more hybridizations per query strain. Each 70mer oligo spotted on the B. cereus species microarray is spotted once. Positive controls on the array consist of oligos designed from the sequenced reference genome, Sterne, and negative controls on the array consist of oligos designed from the thale cress plant, Arabidopsis thaliana.

2010-05-20 | E-GEOD-19125 | biostudies-arrayexpress

Anthrax anthrax

Project description:Anthrax anthrax overview

| PRJNA1084976 | ENA