Project description:Communications between cardiomyocytes and fibroblasts in the heart are thought to occur through both secreted growth factors and via alterations in the structural properties of the extracellular matrix that each of the cell types helps generate. While perturbations in fibroblast activity are known to impact development of cardiomyocyte hypertrophy, the specific role played by collagen in this intercellular communication remains unknown. In this study we addressed this knowledge gap through differential regulation of collagen 1a2 using mouse hearts. The microarray assays reported here were carried out to assess the effects of collagen 1a2 ablation on cardiac transcriptional profiles.
Project description:We searched for candidate genes responsible for Epithelial-to-mesenchymal transition (EMT) by microarray analysis of cultured lung cancer cells with or without the property of spheroid formation. We found increased expression of a variety of adhesion molecules in cancer stem-like cells, including Collagen XVII. Further functional assays and signaling pathway were also investigated.
Project description:RNA seq on primary pancreatic cancer (KPPC;Col1pdxKO cancer-collagen1 knockout) cells growing on collagen 1 homotrimers and heterotrimers. In this study, we identify that pancreatic cancer cells produce a unique Collagen1 homotrimer variant, in contrast to the Collagen1 heterotrimer produced by normal cells (such as fibroblasts). The variant forms of Collagen1 (homotrimer and heterotrimer) have distinct effects on cancer cell behaviors. We culture the pancreatic cancer cells on purified Collagen1 homotrimer and heterotrimer (as well as vehicle control) and examine the global changes of gene expression profile in cancer cells by variant Collagen1 subtypes.