Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bradyrhizobium niftali strain:USDA 320 | isolate:USDA 320

ABSTRACT: Bradyrhizobium niftali USDA 320 genome sequencing

PROVIDER: PRJNA1115704 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptional differences in Bradyrhizobium sp. USDA 3456 during growth on methanol with La versus succinate with La

Project description:Nodule-forming bacteria play crucial roles in plant health and nutrition by fixing atmospheric nitrogen. Despite the importance of this relationship, how nodule-forming bacteria are affected by plant exudates and soil minerals is not fully characterized. Of particular interest are the effects of plant-derived methanol and lanthanide metals on the growth of nitrogen-fixing Rhizobiales. Prior work has demonstrated that select Bradyrhizobium are able to assimilate methanol only in the presence of lanthanide metals; however, the pathway enabling assimilation remains unknown. Here we characterize Bradyrhizobium sp. USDA 3456 to determine the pathways involved in methanol metabolism. Based on genomic analyses, we hypothesized that methanol assimilation in these organisms occurs via the lanthanide-dependent methanol dehydrogenase XoxF, followed by oxidation of formaldehyde via the glutathione-linked oxidation pathway, subsequent oxidation of formate via formate dehydrogenases, and finally assimilation of CO2 via the Calvin Benson Bassham (CBB) pathway. Transcriptomics revealed upregulation of the aforementioned pathways in Bradyrhizobium sp. USDA 3456 during growth on methanol. Assays demonstrated increased activity of the glutathione-linked oxidation pathway and formate dehydrogenases during growth on methanol compared to succinate. 13C-labeling studies demonstrate the presence of CBB intermediates and label incorporation during growth on methanol. Our findings provide multiple lines of evidence supporting the proposed XoxF-CBB pathway and, combined with genomic analyses, suggest that this metabolism is widespread among Bradyrhizobium and Sinorhizobium species.

2025-06-27 | GSE295604 | GEO

Bradyrhizobium diazoefficiens strain:USDA 468 | isolate:USDA 468

Project description:Bradyrhizobium diazoefficiens USDA 468 genome sequencing

| PRJNA1339903 | ENA

Bradyrhizobium elkanii strain:USDA 475 | isolate:USDA 475

Project description:Bradyrhizobium elkanii USDA 475 genome sequencing

| PRJNA1340401 | ENA

Bradyrhizobium elkanii strain:USDA 4464 | isolate:USDA 4464

Project description:Bradyrhizobium elkanii USDA 4464 genome sequencing

| PRJNA1354048 | ENA

Bradyrhizobium ottawaense strain:USDA 233 | isolate:USDA 233

Project description:Bradyrhizobium ottawaense USDA 233 genome sequencing