Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DNA methylation profiles in seven mutant hESCs and wt hESCs(control, empty vector) at 9 days

ABSTRACT: DNA methylation profiles in seven mutant hESCs and wt hESCs(control, empty vector) at 9 days

PROVIDER: PRJNA1117412 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

DNA methylation profiles in seven mutant hESCs and wt hESCs(control, empty vector) at 9 days

Project description:To investigate the effect of oncogenic mutations on genome-wide DNA methylation in stem cells, we performed an Infinium MethylationEPIC BeadChip assays. To clarify that the epigenetic change is caused only by one oncogenic mutation, we introduced each oncogene into individual wt hESCs, using dox to overexpress the GoF mutation gene for nine days. The DNA methylation profiles demonstrated that the seven mutant hESCs and wt hESCs as control (empty vector) were distinguished by DNA methylated gene loci.

2025-05-01 | GSE268459 | GEO

DNA methylation profiles in seven mutant NPCs and wt NPCs (control, empty vector) at 2 days

Project description:DNA methylation profiles in seven mutant NPCs and wt NPCs (control, empty vector) at 2 days

| PRJNA1117414 | ENA

DNA methylation profiles in seven mutant NPCs and wt NPCs (control, empty vector) at 2 days [LM17-Lm24]

Project description:DNA methylation profiles in seven mutant NPCs and wt NPCs (control, empty vector) at 2 days [LM17-Lm24]

| PRJNA1117422 | ENA

Osteopontin vs empty vector

Project description:Osteopontin tranfected vs empty vector breast cell line Keywords: parallel sample

2004-01-07 | GSE939 | GEO

HCT116 cells N-BLR shRNA vs. empty vector control

Project description:HCT116 cells transfected with lentiviral vectors expressing two different N-BLR shRNAs (clones #3-1 and #4-7) and empty vector control

2016-12-27 | GSE92915 | GEO

DNA methylation profiles in 3 mutant NPCs and wt NPCs (control, empty vector) at 10 days

Project description:DNA methylation profiles in 3 mutant NPCs and wt NPCs (control, empty vector) at 10 days

| PRJNA1117425 | ENA

OSLN Reprogramming cells: empty vector vs. HIF2α over-expression

Project description:Transcriptional profiling of Oct4, Sox2, Lin28 and Nanog (OSLN) reprogramming cell of empty vector compared to HIF2α over-expression at the early stage (day 12) and the late stage(day 30) using fibroblasts MRC5 and IMR90

2014-05-01 | GSE54898 | GEO

Transcription profiling of human mammary epithelial cells transduced with either hTERT, empty LXSN vector or empty BABE vector

Project description:Analysis of gene expression in mammary epithelial cells transduced with either hTERT, empty LXSN vector or empty BABE vector.

2007-12-13 | E-GEOD-361 | biostudies-arrayexpress

DNA methylation profiles in seven mutant NPCs and wt NPCs (control, empty vector) at 2 days

Project description:To investigate temporal DNA methylation changes occurring during human neural progenitor cells (NPCs) maintenance in early times via genomic DNA methylation measurement by Infinium MethylationEPIC BeadChip assay, we introduced IDH1-R132H, KRAS-G12C, TP53-R273C, BRAF-V600E, NRAS-Q61R, HRAS-Q61R, and SOX17-S403I mutations separately into NPCs at day 0, with dox induction for 2 days to overexpress the oncogenes. After 2 days of induction, we investigated the DNA methylation profiles in NPCs, in order to investigate the epigenetic change during oncogene induction.

2025-05-01 | GSE268464 | GEO

RNA-seq of MCF10A cells stably expressing empty vector, GFP, miR-105, or MYC

Project description:To identify gene expression changes associated with overexpression of miR-105 or MYC in MCF10A non-cancerous human mammary epithelial cells, we analyzed RNA isolated from engineered MCF10A cell lines that stably express empty vector, GFP, miR-105, or MYC by RNA-seq. Gene expression in cells overexpressing miR-105 or MYC was compared to cells expressing the empty vector or GFP, both of which served as controls in this experiment.

2018-02-11 | GSE106502 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data