Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zebra fish

ABSTRACT: zebra fish Genome sequencing and assembly

PROVIDER: PRJNA1122382 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29383350.fastq.gz	Fastqsanger.gz
	SRR29383351.fastq.gz	Fastqsanger.gz
	SRR29383352.fastq.gz	Fastqsanger.gz
	SRR29383353.fastq.gz	Fastqsanger.gz
	SRR29383354.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Feces microbiota of the Zebra fish Danio rerio

Project description:Feces microbiota of the Zebra fish Danio rerio Raw sequence reads

| PRJNA476782 | ENA

Maylandia zebra

Project description:Metriaclima zebra genome sequencing project.

| PRJNA60369 | ENA

Hartmann zebra genome

Project description:Genome assembly of a female Hartmann zebra

| PRJEB102554 | ENA

Hartmann zebra genome sequence

Project description:de novo genome assembly of a female Hartmann zebra (Equus zebra hartmannae)

| PRJEB102460 | ENA

Zebra fish (Danio rerio) larvae exposure at Cd or Cu

Project description:Zebra fish (Danio rerio) larvae exposure at Cd or Cu Raw sequence reads

| PRJNA793298 | ENA

Effect of expression of ZEBRA on gene expression in Ramos cells [CUT-Tag]

Project description:EBV immediate early protein ZEBRA was corroborated to interact with Pax5 which controls the fate of B cells. Ramos cells were infected with ZEBRA-expression lentivirus and positively infected cells were sorted, which were named Ramos-Lv-ZEBRA.

2024-04-26 | GSE264476 | GEO

Effect of expression of ZEBRA on gene expression in Ramos cells [ChIP-Seq]

2024-04-26 | GSE264475 | GEO

Validation of a genome-wide search for zebra finch epigenetically regulated genes using Zebra finch Exon Arrays

Project description:DNA methylation is tightly linked with gene expression regulation and has long been regarded a stable epigenetic mark in postmitotic cells. However, it recently became clear that postnatal brains appear to show stimulus-induced de novo CpG methylation or active demethylation related to neuronal plasticity. Due to striking homologies between the brains of birds and mammals, songbirds, especially the zebra finch, propose an attractive model for investigating the genome-wide DNA methylation profile and DNA methylation reconfiguration during brain development. In order to obtain a first genome-wide compendium of genes under putative DNA methylation control, we performed MethyCap-seq experiments on two recently cultured zebra finch cell lines, G266 and ZFTMA, also upon AZA-induced demethylation. First, the MethylCap-seq methodology in zebra finch was validated by comparison with RRBS generated data. Subsequently, quantitative analysis identified 30,700 significantly demethylated loci upon AZA-treatment. Further examination revealed enrichment of these regions in exons and promoters. To assess the influence of methylation on gene expression, RNA-seq experiments were performed. Comparison of the RNA-seq and MethylCap-seq results showed that at least 357 of the 3,457 AZA-upregulated genes are putatively regulated by methylation in the promoter region, for which a pathway analysis showed obvious enrichment for neurological networks. The ZF exon-arrays analysis validated the RNA-seq expression result for 75% and 62%, of the down and up-regulated genes, respectively. A subset of genes was validated also using qPCR and CpG pyrosequencing. To our knowledge, this study provides the first genome-wide DNA methylation map of the zebra finch genome as well as a comprehensive set of genes of which transcription is under putative methylation control

2016-02-22 | GSE71344 | GEO

Zebrias zebra

Project description:Zebrias zebra overview

| PRJNA207901 | ENA

Equus zebra

Project description:Equus zebra overview

| PRJNA177479 | ENA