Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Target enrichment data of 144 Elongate ilisha from Northwestern Pacific coast

PROVIDER: PRJNA1122400 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29355300.fastq.gz	Fastqsanger.gz
	SRR29355400.fastq.gz	Fastqsanger.gz
	SRR29355301.fastq.gz	Fastqsanger.gz
	SRR29355401.fastq.gz	Fastqsanger.gz
	SRR29355302.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 144

Similar Datasets

Project description:Ilisha elongate genome

| PRJNA967191 | ENA

Project description:Ilisha elongate illunima sequencing

| PRJNA1157212 | ENA

Detection and mapping of species and strains from the diatom genus Pseudo-nitzchia (Bacillariophyceae) along the Oregon and Washington coast using microarray-based, field-deployable, rapid, high-resolution assay

Project description:DNA oligonucleotide microarrays were designed with 307 probes for 96 internal transcribed spacer (ITS1, located between 18S and 26S rRNA genes) sequences of known species and strains from the genus Pseudo-nitzschia (Bacillariophyceae). In addition, microarrays also carried 1893 probes targeting ITS1 aequences of marine Crenarchaeota and Alphaproteobacteria of SAR11 clade. In order to assign microarray profiles to Pseudo-nitzschia ribotypes and species and to 'train' the data analysis system, we grew cultures of Pseudo-nitzschia in the laboratory with identities confirmed through rDNA sequence analysis. In total, 9 cultures and 35 environmental water samples were hybridized to microarrays, in some cases, in duplicate or triplicate. Analysis of microarray data allowed us to identify and map Pseudo-nitzschia spp. in the coastal waters along Washington and Oregon coast of the Eastern Pacific Ocean, and to observe seasonal changes in diatom community composition. Total DNA was isolated from 9 Pseudo-nitzschia laboratory cultures and 35 environmental water samples collected during 7 field campaigns in 2007-2009. The environmental samples were collected at distances of 5 to 55 km from the coast, along the following transects in the Pacific Ocean covering over 300 km of the coastline: La Push (LP), Grays Harbor (GH), Columbia River (CR), and Newport Hydroline (NH). The DNA samples were subjected to PCR amplification with the primers specific for ITS1 sequences. The resultant biotin-labeled target samples were analyzed using microarray hybridization with the CombiMatrix ElectraSense 4X2K format. Out of 44 analyzed samples, 40, 2, and 2 were used for single, duplicate and triplicate hybridizations, respectively.

2012-05-31 | E-GEOD-27141 | biostudies-arrayexpress

Project description:Polypodium Target Enrichment Data

| PRJNA841228 | ENA

2012-06-01 | GSE27141 | GEO

Project description:Picoeukaryotic diversity in the northwestern Pacific

| PRJNA478298 | ENA

Northwestern pacific coralline algae surface microbiome

Project description:Northwestern pacific coralline algae surface microbiome

| PRJEB66912 | ENA

Project description:Euptychiina butterflies target enrichment raw data

| PRJNA483787 | ENA

Project description:Target enrichment data of Stewartia species