Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole genome sequencing of mutants and competition experiments with four biological replicates

PROVIDER: PRJNA1125933 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29488300_1.fastq.gz	Fastqsanger.gz
	SRR29488300_2.fastq.gz	Fastqsanger.gz
	SRR29488400_1.fastq.gz	Fastqsanger.gz
	SRR29488400_2.fastq.gz	Fastqsanger.gz
	SRR29488500_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1382

Similar Datasets

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT

Project description:Using whole genome bisulfite sequencing to provide single-base resulution of DNA methylation status in ros1, idm1, and rdd mutants and identify hypermethylated regions comparing to wild type Arabidopsis plants. Examination of 3 different mutants' methylome. 8 samples (3 mutants, 1 WT, each has two biological replicates)

2012-06-17 | E-GEOD-33071 | biostudies-arrayexpress

arabidopsis accession columbia 78h old whole seedling expression

Project description:four biological replicates of arabidopsis accession columbia 78h old whole seedling expression data Keywords: exon/intergenic comparison

2006-12-19 | GSE6562 | GEO

Whole-genome bisulfite sequencing across 27 developmental stages in Sus scrofa skeletal muscle

Project description:To obtain an overview of the methylome landscape in the developing pig skeletal muscle, 81 high-quality whole-genome bisulfite sequencing(WGBS) libraries that covered 27 developmental stages (3 biological replicates per stage) from embryonic day 33 (E33) to postnatal day 180 (D180) were produced by whole-genome bisulfite sequencing.

2020-09-01 | GSE157043 | GEO

Comparison of genomes and proteomes of whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds

Project description:We performed whole genome sequencing on four isolates of C. jejuni, two of which were closely related phylogenetically while the remaining two were phylogenetically divergent. Genomes were closed and finished. 4-plex iTRAQ experiments were performed on the four isolates after growth on solid medium for a standard time. The research questions were: 1) how closely do the protein profiles match among the four isolates, and 2) were there any results consistent with differences in regulation among isolates.

2017-08-04 | MSV000081410 | MassIVE

Project description:Biological experiments

| PRJNA418363 | ENA

Analyzing the role of transcription elongation factors Spt4-5 in splicing

Project description:A set of 22 expts. aimed at identifying splicing events dependent upon on the Spt4-5 transcription elongation factors in yeast. Four spt mutants and an mRNA capping mutant were analyzed four times each, including biological and technical (dye-swap) replicates. Two wt vs wt expts. were also performed. Keywords = transcription/spt5/spt4/splicing/DEDS Keywords: other

2005-11-01 | GSE1610 | GEO

Homo sapiens

Project description:Whole exome sequencing of biological and technical replicates in breast cancer

| PRJNA310728 | ENA

Project description:Nanopore sequencing for four biological replicates of nerolidol-producing Saccharomyces cerevisiae strain ILHA NLD128

| PRJNA807455 | ENA

Temporal transcriptome in Pou5f3 and Sox19b mutant zebrafish embryos

Project description:We applied time-series SE50bp RNA-seq with 35M reads per sample in wild-type, MZsox19b, MZspg, and double MZspgsox19b mutants in zebrafish embryos to understand the role of Pou5f3 and Sox19b during zebrafish zygotic genome activation. In total we sequenced 4 biological replicates (rep1-4) for WT time curve and 2 biological replicates (rep1-2) for each mutant. WT rep5 are technical replicates for WT rep1, while MZsox19b rep3 and MZspg rep3 are techical replicates for MZsox19b rep1 and MZspg rep1, respectively.

2021-03-03 | GSE137424 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data