Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparative genomics of parasitoid lifestyle as exemplified by Mermithidae and Nematomorpha

PROVIDER: PRJNA1126031 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29469246_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Project description:Comparative genomics of adaptation to nocturnal lifestyle in owls

| PRJNA592858 | ENA

E-GEOD-5722

Project description:Functional Genomics of Ozone Stress in Arabidopsis.

2014-07-03 | E-GEOD-5722 | ExpressionAtlas

Toxins from scratch? - Diverse, multimodal gene origins in the predatory robber fly Dasypogon diadema indicate dynamic venom evolution in dipteran insects

Project description:Venoms and the toxins they contain represent molecular adaptations that have evolved on numerous occasions throughout the animal kingdom. However, the processes that shape venom protein evolution are poorly understood because of the scarcity of whole genome data available for comparative analyses of venomous species. Here, we perform a broad comparative toxicogenomic analysis to gain insight into the genomic mechanisms of venom evolution in robber flies (Asilidae). We first sequenced a high-quality draft genome of the hymenopteran hunting robber fly Dasypogon diadema, and analysed its venom by a combined proteotranscriptomic approach, and compared our results to recently described robber fly venoms to assess the general composition and major components of asilid venom. We then applied a comparative genomics approach, based on one additional asilid genome, ten high-quality dipteran genomes, and two lepidopteran outgroup-genomes, to reveal the evolutionary mechanisms and origins of identified venom proteins in robber flies. While some venom proteins were identified in the non-asilid genomes, several of the identified highly expressed venom proteins appear to be unique to robber flies. Our results reveal that the venom of D. diadema likely evolves in a multimodal fashion comprising 1) neofunctionalization after gene duplication, 2) expression-dependent co-option of proteins and 3) asilid lineage-specific orphan genes with enigmatic origin. The role of such orphan genes is currently being disputed in evolutionary genomics, but has not yet discussed in the context of toxin evolution. Our results display an unexpected dynamic venom evolution in asilid insects, which contrasts the findings of the only other insect toxicogenomic evolutionary analysis, in parasitoid wasps (Hymenoptera), were toxin evolution is dominated by single gene co-option.

2019-06-13 | PXD013358 | Pride

Limosilactobacillus reuteri

Project description:Comparative Genomics of the Herbivore Gut Symbiont Lactobacillus reuteri Reveals Genetic Diversity and Lifestyle Adaptation

| PRJNA472230 | ENA

E-MAXD-6

Project description:Transcription profiling by array of Drosophila larvae after parasitoid attack

2014-08-01 | E-MAXD-6 | ExpressionAtlas

Microarray-based Gene Expression Analysis in the Silkworm Bombyx mori After Parasitization by Tachinid Flies

Project description:We identified genes regulated by parasitization of the silkworm Bombyx mori by three tachinid parasitoid species, Exorista japonica, Drino inconspicuoides and Pales pavida, using oligonucleotide microarrays. The numbers of genes and their intensity of expression varied with the species of parasitoid, within silkworm hemocytes and fat body.

2015-09-17 | GSE73085 | GEO

E-GEOD-8938

Project description:Transcription profiling by array of Drosophila larvae infected with parasitoid wasps

2014-08-16 | E-GEOD-8938 | ExpressionAtlas

GNPS_Nocardia_siderophores_of_selected_strains

Project description:Nocardia metabolomics dataset from "Comparative Genomics to Metabolomics: Nocobactin Production in Nocardia"

2020-01-08 | MSV000084771 | GNPS

Small RNAs from 11 Drosophila species

Project description:Annotation of small RNAs from 11 Drosophila species for the purpose of non-coding RNA annotation and comparative genomics assessment.

2017-11-20 | GSE98013 | GEO

microbial mat metagenome

Project description:Microcoleus comparative genomics

| PRJNA733706 | ENA