Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Airborne microorganisms from five different sampling sites in Shanghai

PROVIDER: PRJNA1134090 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29819600_1.fastq.gz	Fastqsanger.gz
	SRR29819600_2.fastq.gz	Fastqsanger.gz
	SRR29819601_1.fastq.gz	Fastqsanger.gz
	SRR29819601_2.fastq.gz	Fastqsanger.gz
	SRR29819602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Danube_Water_Monitoring_2013

Project description:Danube river water sampling at 4 different sites

| PRJEB5960 | ENA

Project description:Airborne microorganisms in Hefei

| PRJNA736182 | ENA

Plant and bird presence strongly influences the microbial communities in soils of Admiralty Bay, Maritime Antarctica

Project description:Understanding the environmental factors that shape microbial communities is crucial, especially in extreme environments, like Antarctica. Two main forces were reported to influence Antarctic soil microbes: birds and plants. Both birds and plants are currently undergoing unprecedented changes in their distribution and abundance due to global warming. However, we need to clearly understand the relationship between plants, birds and soil microorganisms. We therefore collected rhizosphere and bulk soils from six different sampling sites subjected to different levels of bird influence and colonized by Colobanthus quitensis and Deschampsia antarctica in the Admiralty Bay, King George Island, Maritime Antarctic. Microarray and qPCR assays targeting 16S rRNA genes of specific taxa were used to assess microbial community structure, composition and abundance and analyzed with a range of soil physico-chemical parameters. The results indicated significant rhizosphere effects in four out of the six sites, including areas with different levels of bird influence. Acidobacteria were significantly more abundant in soils with little bird influence (low nitrogen) and in bulk soil. In contrast, Actinobacteria were significantly more abundant in the rhizosphere of both plant species. At two of the sampling sites under strong bird influence (penguin colonies), Firmicutes were significantly more abundant in D. antarctica rhizosphere but not in C. quitensis rhizosphere. The Firmicutes were also positively and significantly correlated to the nitrogen concentrations in the soil. We conclude that the microbial communities in Antarctic soils are driven both by bird and plants, and that the effect is taxa-specific.

2012-06-01 | GSE33847 | GEO

marine metagenome

Project description:Transcriptional difference of deep sea microorganisms under different sampling methods

| PRJNA1109759 | ENA

Airway microbiota in patients with synchronous multiple primary lung cancer: the bacterial topography of the respiratory tract

Project description:we analyzed the characteristics of the respiratory microbiome, which was collected from different sites and using different sampling methods.

2022-04-09 | GSE200111 | GEO

Airborne microorganisms

Project description:Airborne microorganisms Raw sequence reads

| PRJNA640998 | ENA

Comparison of Chamelea gallina gene expression profiles among different season and collection sites

Project description:A C. gallina microarray platform was developed to assess variations on transcritpomic profiles between different seasons and sampling sites

2016-01-08 | GSE76635 | GEO

Project description:Airborne microorganisms from waste collection facility

| PRJNA1155258 | ENA

Project description:Soil microorganisms in 40 sampling sites of invasive plant Solanum rostratum in northern China

| PRJNA1332684 | ENA

Project description:Variability of airborne microbiome at different urban sites across seasons: case study in Rome

| PRJNA962806 | ENA