Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Hippopotamus amphibius (East African hippopotamus) genome, mHipAmp2, sequence data

PROVIDER: PRJNA1142151 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR30047571_subreads.fastq.gz	Fastqsanger.gz
	SRR30047572.fastq.gz	Fastqsanger.gz
	SRR30047573.fastq.gz	Fastqsanger.gz
	SRR30047574_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 19

Similar Datasets

Project description:Hippopotamus amphibius (East African hippopotamus) genome, mHipAmp2

| PRJNA972732 | ENA

Hippopotamus amphibius kiboko isolate:mHipAmp2

Project description:Hippopotamus amphibius (East African hippopotamus) genome, mHipAmp2, haplotype 1

| PRJNA936167 | ENA

Hippopotamus amphibius kiboko isolate:mHipAmp2

Project description:Hippopotamus amphibius (East African hippopotamus) genome, mHipAmp2, haplotype 2

| PRJNA936168 | ENA

Hippopotamus amphibius

Project description:Hippopotamus amphibius overview

| PRJNA312982 | ENA

Hippopotamus amphibius

Project description:Hippopotamus amphibius - Skin Transcriptome

| PRJNA507170 | ENA

Ancient proteins resolve the evolutionary history of Darwin's South American ungulates

Project description:The project aimed to characterize the collagen type I (COL1) sequences from Pleistocene Macrauchenia sp. and Toxodon sp. bone samples, and by comparison with existing COL1 sequences available from genomic sources establish the phylogenetic position of both extinct species. In order to resolve their phylogenetic position, COL1 was extracted from two Toxodon (samples MLP201204, MACN201212, York12, York13) and two Macrauchenia (samples MLP201212, MACN201202, York14, York15). In addition, modern and Pleistocene COL1 was extracted from additional species currently not present in available databases (Mylodon darwinii, Cyclopes didactylus, Hippopotamus amphibius, Tapirus terrestris) or from species for which COL1 sequences are available (Equus sp., Oryceropus afer). All extractions were performed at BioArCh, University of York (UK). Analyses took place on Bruker maXis HD (Macrauchenia sp., Toxodon sp., Equus sp.) and Thermo Scientific Hybrid Quadruopole-Orbitrap (Macrauchenia sp., Toxodon sp., Mylodon darwinii, Cyclopes didactylus, Hippopotamus amphibius, Tapirus terrestris, Oryceropus afer) platforms.

2015-03-19 | PXD001411 | Pride

Hippopotamus amphibius kiboko

Project description:Hippopotamus amphibius kiboko Genome sequencing and assembly

| PRJNA312828 | ENA

Hippopotamus amphibius isolate:BS01

Project description:Hippopotamus amphibius isolate:BS01 Genome sequencing and assembly

| PRJNA399399 | ENA

Pronounced expression of extracellular matrix proteoglycans regulated by Wnt pathway underlies the parallel evolution of lip hypertrophy in East African cichlids

Project description:Proteome analysis of East African chiclid lip tissues to evaluate the parallel evolution of lip hypertrhophy.

2025-04-09 | PXD051571 | JPOST Repository

Dynamic co-evolution of transposable elements and the piRNA pathway in East African cichlid fishes [smallRNA-seq]

Project description:East African cichlid fishes have diversified in an explosive fashion, but the (epi)genetic basis of the phenotypic diversity of these fishes remains largely unknown. Although transposable elements (TEs) have been associated with phenotypic variation in cichlids, little is known about their transcriptional activity and epigenetic silencing. Here, we describe dynamic patterns of TE expression in African cichlid gonads and during early development. Orthology inference revealed an expansion of piwil1 genes in Lake Malawi cichlids, likely driven by PiggyBac TEs. The expanded piwil1 copies have signatures of positive selection and retain amino acid residues essential for catalytic activity. Furthermore, the gonads of African cichlids express a Piwi-interacting RNA (piRNA) pathway that target TEs. We define the genomic sites of piRNA production in African cichlids and find divergence in closely related species, in line with fast evolution of piRNA-producing loci. Our findings suggest dynamic co-evolution of TEs and host silencing pathways in the African cichlid radiations. We propose that this co-evolution has contributed to cichlid genomic diversity.

2024-04-01 | GSE252804 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data