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Erbin knockout leads to differential gene expression in the rat proximal tubular epithelial cell line NRK-52E

ABSTRACT: Erbin knockout leads to differential gene expression in the rat proximal tubular epithelial cell line NRK-52E

PROVIDER: PRJNA1145280 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR30171733_1.fastq.gz	Fastqsanger.gz
	SRR30171733_2.fastq.gz	Fastqsanger.gz
	SRR30171734_1.fastq.gz	Fastqsanger.gz
	SRR30171734_2.fastq.gz	Fastqsanger.gz
	SRR30171735_1.fastq.gz	Fastqsanger.gz

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Erbin knockout leads to differential gene expression in the rat proximal tubular epithelial cell line NRK-52E

Project description:We generated the Erbin-deficient NRK-52E sublines (referred as to KO) using CRISPR/Cas9 approach, and performed transcriptome sequencing to identify the differentially expressed genes compared to the control (referred as to NC).

2025-04-01 | GSE274147 | GEO

Overexpression of METTL3 leads to differential gene expression in the rat proximal tubular epithelial cell line NRK-52E

Project description:We generated the NRK-52E sublines overexpressing METTL3 (referred as to lv_Mettl3), and performed transcriptome sequencing to identify the differentially expressed genes compared to the control cell line (referred as to lv_nc).

2025-06-28 | GSE290293 | GEO

Overexpression of METTL3 leads to differential gene expression in the rat proximal tubular epithelial cell line NRK-52E

Project description:Overexpression of METTL3 leads to differential gene expression in the rat proximal tubular epithelial cell line NRK-52E

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Expression data from EMT-derived NRK-52E cells before and after the AMPKα2 knockdown

Project description:Recent studies have shown that AMPKα2 can regulate epithelial-mesenchymal transition(EMT) processes during kidney fibrosis. However, the underlying mechanisms for AMPKα2 changes in renal tubular EMT remain unclear. TGF-β1 was used to induce epithelial-mesenchymal transition(EMT) in normal rat renal tubular epithelial (NRK-52E) cells. Gene microarray was used to analyze differential gene expression in EMT-derived NRK-52E cells before and after the AMPKα2 knockout

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Expression data from NRK-52E cells treated with aristolochic acids for 6h, 24h and 72h

Project description:In this study we have examined the effect of sub-cytotoxic exposure to aristolochic acids (1.65µM) at 6h, 24h and 72h on the whole-genome expression profile in a rat proximal renal tubule cell line (NRK-52E). We used microarrays to detail the mechanism of toxicity and possibly carcinogenicity of aristolochic acids in rat renal proximal cells. NRK-52E cells were cultured to confluence on 6-well plates. Cells were then exposed to aristolochic acid dissolved in DMSO (0.1%) at the IC10 concentration at 72h (1.65 ?M) or DMSO only as control. After 6h, 24h and 72h the medium was removed and RNA was extracted from the cells. Three studies were conducted at each time point.

2015-07-02 | E-GEOD-68687 | biostudies-arrayexpress

Expression data from NRK-52E cells treated with chlorothalonil for 6h, 24h and 72h.

Project description:Chlorothalonil (2,4,5,6-tetrachloroisophthalonitrile) is a widely used broad spectrum fungicide. Despite its common use, chlorothalonil is classified by IARC as Group 2B, a possible human carcinogen, with formation of renal tubular adenomas and carcinomas in rats of both sexes and in male mice. In this study we have examined the effect of sub-cytotoxic exposure to chlorothalonil at 6h, 24h and 72h on the whole-genome expression profile in a rat proximal renal tubule cell line (NRK-52E). We used microarrays to detail the mechanism of toxicity and possibly carcinogenicity.

2020-09-20 | GSE46852 | GEO

Proteomics of Rat Proximal-Tubule Cell-Culture Models

Project description:Cultured cell lines are widely used for research in the physiology, pathophysiology, toxicology and pharmacology of the renal proximal tubule. The lines that are most appropriate for a given use depend on the genes expressed. New tools for transcriptomic and proteomic profiling using RNA-sequencing (RNA-Seq) and mass spectrometry make it possible to catalog expressed genes in each cell line. This data set is the protoemic data of Rat NRK-52E cell line. We concludeno cell line fully matched the transcriptome of native proximal tubule cells. However, some of the lines tested are suitable for the study of particular metabolic and transport processes seen in the proximal tubule.

2020-10-15 | PXD021160 | Pride

Expression data from NRK-52E cells treated with aristolochic acids for 6h, 24h and 72h

2015-07-02 | GSE68687 | GEO

Transcription profiling of rat Adamts16 variants linked to inherited hypertension: knockdown of Adamts16 in NRK-52E cells

Project description:We used Affymetrix GeneChips to expression profile rat kidney NRK-52E cells treated with control scrambled siRNA or siRNA specifically targeting Adamts16. The goal of this project was to identify the downstream genes regulated by Adamts16 (the function of Adamts16 has yet to be fully delineated). Gene expression differences resulting from these siRNA-mediated gene knockdown experiments will be compared to the gene expression profiling experiments comparing kidneys from Dahl salt-senstive hypertensive inbred strain versus less hypertensive S.LEW(D1MCO4x1x3Bx1) congenic strain. The S.LEW(D1MCO4x1x3Bx1) congenic animal is an S rat containing the LEWIS allele for Adamts16 instead of the S allele. Gene expression differences in the kidneys of S.LEW(D1MCO4x1x3Bx1) versus S are hypothesized to result from sequence differences between the S and LEWIS alleles for Adamts16. It is further hypothesized that allelic differences in Adamts16 in inbred rats is responsible for blood pressure variance. The downstream genes regulated by Adamts16 may provide insight pertaining to the mechanism of blood pressure differences. Experiment Overall Design: RNA from 3 independent cultures of NRK-52E cells treated with scrambled control siRNA was extracted for target preparation and hybridization onto Affymetrix GeneChips. We also isolated RNA from NRK-52E cells treated with two different siRNAs targeting Adamts16 (n=2 independent cultures for each siRNA) for target preparation and hybridization onto Affymetrix GeneChips.

2008-11-13 | E-GEOD-12724 | biostudies-arrayexpress

C-peptide regulates early transcription in rat proximal tubular cells

Project description:C-peptide exerts beneficial effects on glomerular hyperfiltration in type I diabetic patients. As C-peptide localizes to the nucleus, we investigated the transcriptional activities of C-peptide in proximal tubular cells isolated from diabetic rats. Two groups of proximal tubular cells isolated from type I diabetic rats: 1 treated with C-peptide, and 1 untreated. 2-3 replicates per group.

2011-07-26 | E-GEOD-24687 | biostudies-arrayexpress

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