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Marine sponge-Halichondria panicea

ABSTRACT: Marine sponge-Halichondria panicea + seawater Raw sequence reads

PROVIDER: PRJNA1147229 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR30213300_1.fastq.gz	Fastqsanger.gz
	SRR30213300_2.fastq.gz	Fastqsanger.gz
	SRR30213301_1.fastq.gz	Fastqsanger.gz
	SRR30213301_2.fastq.gz	Fastqsanger.gz
	SRR30213302_1.fastq.gz	Fastqsanger.gz

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Combined cellular and proteomics approach suggest differential processing of a native and a foreign vibrio in the sponge Halichondria panicea

Project description:Phagocytosis is a conserved cellular mechanism for food uptake, defense and general animal-microbe interactions in metazoans. How the discrimination and subsequent processing of native and foreign microbes is facilitated remains largely unknown in marine invertebrates. Thereto, we combined a recently developed phagocytic assay with proteomics analysis to compare the phagocytic activity of the sponge Halichondria panicea upon encounter with a native (i.e., isolated from H. panicea; Hal 281) and a foreign (i.e., isolated from Nematostella vectensis; NJ1) Vibrio isolate.

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Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea.

Project description:Representatives of Actinobacteria were isolated from the marine sponge Halichondria panicea collected from the Baltic Sea (Germany). For the first time, a comprehensive investigation was performed with regard to phylogenetic strain identification, secondary metabolite profiling, bioactivity determination, and genetic exploration of biosynthetic genes, especially concerning the relationships of the abundance of biosynthesis gene fragments to the number and diversity of produced secondary metabolites. All strains were phylogenetically identified by 16S rRNA gene sequence analyses and were found to belong to the genera Actinoalloteichus, Micrococcus, Micromonospora, Nocardiopsis, and Streptomyces. Secondary metabolite profiles of 46 actinobacterial strains were evaluated, 122 different substances were identified, and 88 so far unidentified compounds were detected. The extracts from most of the cultures showed biological activities. In addition, the presence of biosynthesis genes encoding polyketide synthases (PKSs) and nonribosomal peptide synthetases (NRPSs) in 30 strains was established. It was shown that strains in which either PKS or NRPS genes were identified produced a significantly higher number of metabolites and exhibited a larger number of unidentified, possibly new metabolites than other strains. Therefore, the presence of PKS and NRPS genes is a good indicator for the selection of strains to isolate new natural products.

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