Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Water lily imprinting and seed single cell transcriptomes

PROVIDER: PRJNA1157574 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33593380_1.fastq.gz	Fastqsanger.gz
	SRR33593380_2.fastq.gz	Fastqsanger.gz
	SRR33593381_1.fastq.gz	Fastqsanger.gz
	SRR33593381_2.fastq.gz	Fastqsanger.gz
	SRR33593382_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Transcriptomic insight into viviparous growth in water lily

Project description:Here We revealed the complex mechanism of viviparity in water lily. The transcriptomic signatures identified in this pathway are important basis for future breeding and research of viviparity in water lily and other plant species.

2021-12-31 | GSE164888 | GEO

Transcriptomic analysis of water- versus Xcf-inoculated common bean seeds at three developmental stages

Project description:transcriptome approach was performed at three stages of seed development during seed filling, seed maturation and seed maturity to compare between seed transcriptomes from Xcf-inoculated and water-inoculated seeds.

2024-09-03 | GSE226918 | GEO

Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: BS-seq of Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm

Project description:Imprinted gene expression occurs during seed development in plants and is associated with differential DNA methylation of parental alleles, particularly at proximal transposable elements (TEs). Imprinting variability could contribute to observed parent-of-origin effects on seed development. We investigated intraspecific variation in imprinting, coupled with analysis of DNA methylation and small RNAs, among three Arabidopsis strains with diverse seed phenotypes. The majority of imprinted genes were parentally biased in the same manner among all strains. However, we identified several examples of allele-specific imprinting correlated with intraspecific epigenetic variation at a TE. We successfully predicted imprinting in additional strains based on methylation variability. We conclude that there is standing variation in imprinting even in recently diverged genotypes due to intraspecific epiallelic variation. These data demonstrate that epiallelic variation and genomic imprinting intersect to produce novel gene expression patterns in seeds. Whole genome bisulfite sequencing of embryo and endosperm (14 samples).

2014-07-08 | E-GEOD-52805 | biostudies-arrayexpress

Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: small RNA-seq profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid seeds

2014-07-08 | GSE52807 | GEO

Project description:Water Lily Biofilms

| PRJNA1043867 | ENA

2014-07-08 | GSE52805 | GEO

Project description:Imprinted gene expression occurs during seed development in plants and is associated with differential DNA methylation of parental alleles, particularly at proximal transposable elements (TEs). Imprinting variability could contribute to observed parent-of-origin effects on seed development. We investigated intraspecific variation in imprinting, coupled with analysis of DNA methylation and small RNAs, among three Arabidopsis strains with diverse seed phenotypes. The majority of imprinted genes were parentally biased in the same manner among all strains. However, we identified several examples of allele-specific imprinting correlated with intraspecific epigenetic variation at a TE. We successfully predicted imprinting in additional strains based on methylation variability. We conclude that there is standing variation in imprinting even in recently diverged genotypes due to intraspecific epiallelic variation. These data demonstrate that epiallelic variation and genomic imprinting intersect to produce novel gene expression patterns in seeds. Sequencing of 12 small RNA samples from whole seeds 6 days after pollination.

2014-07-08 | E-GEOD-52807 | biostudies-arrayexpress

Project description:water lily genome project

| PRJEB34452 | ENA

Nymphaea colorata

Project description:Water Lily Genome Project

| PRJNA414053 | ENA

Project description:water lily stigma transcriptome

| PRJNA943100 | ENA