Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: mining metagenomes

PROVIDER: PRJNA1167620 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30877833_1.fastq.gz	Fastqsanger.gz
	SRR30877833_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Project description:Microbial Metagenomes in Mining Areas

| PRJNA860834 | ENA

Mining impacted freshwater

Project description:Canada mining impacted freshwater metagenomes

| PRJNA763576 | ENA

Mining for novel cellulase genes

Project description:Mining for novel cellulase genes from different ecosystem metagenomes

| PRJEB12864 | ENA

Project description:Mining metagenomes reveals gut mycobiome alterations associated with metformin and type 2 diabetes mellitus

| PRJNA940065 | ENA

Mining for novel cellulase genes metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Mining for novel cellulase genes from different ecosystem metagenomes (Mining for novel cellulase genes) data set

| PRJEB22517 | ENA

Gene expression profile from airborne Pseudomonas sp. L5B5 strain isolated in Lousal pyrite mine gallery (Portugal)

Project description:The pyrite mine of Lousal, Grândola, Portugal, was discovered in 1882 and extensively exploited from 1900 until its closure in 1988 when the mining ores were not viable economically. Aiming at becoming a cultural-touristic center, the mining area was rehabilitated raising a Mining Museum and a Science Centre along with the reopening of a mining gallery for public access. In recent times, aerobiological studies on subterranean environments such as caves, mines and archeological necropolis revealed to be an important source of novel bacteria, from which their biotechnological potential are under study. Here we present a Pseudomonas sp. isolated from the mine air with potential secondary metabolite biosynthesis, resistance to antibiotics and virulence factors.

2021-11-05 | GSE186946 | GEO

Project description:mining area

| PRJNA1103099 | ENA

Project description:Glycosyltransferase mining

| PRJNA981441 | ENA

Project description:Mining isolates

| PRJNA1184784 | ENA

Differential gene expression of dechlorinating communities with Dehalococcoides mccartyi species

Project description:The aim of this study is to obtain a systems level understanding of the interactions between Dehalococcoides and corrinoid-supplying microorganisms by analyzing community structures and functional compositions, activities and dynamics in trichloroethene (TCE)-dechlorinating enrichments. Metagenomes and metatranscriptomes of the dechlorinating enrichments with and without exogenous cobalamin were compared. Seven draft genomes were binned from the metagenomes. At an early stage (2 d), more transcripts of genes in the Veillonellaceae bin-genome were detected in the metatranscriptome of the enrichment with exogenous cobalamin compared to the one without cobalamin addition. Among these genes, sporulation-related genes exhibited the highest differential expression when cobalamin was not added, suggesting a possible release route of corrinoids from corrinoid-producers. Other differentially expressed genes include those involved in energy conservation and nutrient transport (including cobalt transport). The most highly expressed corrinoid de novo biosynthesis pathway was also assigned to the Veillonellaceae bin-genome. Targeted qPCR analyses confirmed higher transcript abundances of those corrinoid biosynthesis genes in the enrichment without exogenous cobalamin. Furthermore, Dehalococcoides' corrinoid salvaging and modification pathway was upregulated in response to the cobalamin stress. This study provides important insights into the microbial interactions and roles of members of dechlorinating communities under cobalamin-limited conditions.

2017-01-28 | GSE94143 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data