Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Populus tremula x Populus alba cultivar:717-1B4

ABSTRACT: Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD179 transcriptome

PROVIDER: PRJNA1176641 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Populus tremula x alba 717-1B4 Laccaria bicolor S238N ectomycorrhiza

Project description:Illumina technology was used to generate mRNA profiles of Populus tremula x alba 717-1B4 control roots and Laccaria bicolor S238N ectomycorrhiza. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the Populus trichocarpa v4.1 primary transcripts available at Phytozome (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v4_1l) using CLC Genomics Workbench v24.

2025-07-15 | GSE287497 | GEO

Time Course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development

Project description:Illumina technology was used to generate mRNA profiles of a time course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced in triplicates (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the L. bicolor v2 reference transcripts available at the JGI database https://mycocosm.jgi.doe.gov/Lacbi2/Lacbi2.home.html using CLC Genomics Workbench v8.

2021-12-15 | GSE190443 | GEO

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 WT Resequencing

| PRJNA566962 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD23 transcriptome

| PRJNA1176637 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD157 transcriptome

| PRJNA1176638 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD171 transcriptome

| PRJNA1176670 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD89 transcriptome

| PRJNA1176673 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD136 transcriptome

| PRJNA1176587 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - TT30 transcriptome

| PRJNA1176589 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 Gene Expression Profiling - MD13 transcriptome

| PRJNA1176590 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data