Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana isolate:Columbia ecotype

ABSTRACT: Arabidopsis thaliana isolate:Columbia ecotype Raw sequence reads

PROVIDER: PRJNA1177189 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33668502.fastq.gz	Fastqsanger.gz
	SRR33668503.fastq.gz	Fastqsanger.gz
	SRR33668504.fastq.gz	Fastqsanger.gz
	SRR33668505.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

2-week-old Arabidopsis seedlings (Columbia ecotype)

Project description:Comparison of TopHat alignments and assessment of spurious splice junctions for 32nt and 76nt read lengths. Total RNA from 2-week-old Arabidopsis thaliana (ecotype Columbia) seedlings grown on MS plates was isolated using RNeasy Plant Mini Kit from Qiagen. To remove any contaminating DNA, RNA was treated with DNAse. Isolation of poly (A) mRNA and preparation of cDNA library were carried out using the Illumina TrueSeq RNA kit. Sequencing (72 cycle) was done on Illumina Genome Analyzer II.

2011-09-24 | GSE32318 | GEO

2-week-old Arabidopsis seedlings (Columbia ecotype)

2011-09-24 | E-GEOD-32318 | biostudies-arrayexpress

Arabidopsis thaliana cultivar:Columbia

Project description:Arabidopsis thaliana ecotype Columbia (Col-0) raw sequence reads

| PRJNA307295 | ENA

Arabidopsis thaliana cotyledons: ecotype Col-o vs lea13 Ti-DNA line

Project description:Transcriptional profiling of Arabidopsis thaliana cotyledons comparing ecotype Col-0 (Control) with lea13 T-DNA line to elucidate the response mechanism to drought stress conditions that rely on LEA protein function.

2021-01-15 | GSE160866 | GEO

Transcription profiling of Arabidopsis thaliana ecotype Col-0 vs Arabidopsis thaliana ecotype Ler, both grown to Boyes scale 1.04 performed at VIB

Project description:A dye swap experiment to compare Arabidopsis thaliana ecotype Col-0 with Arabidopsis thaliana ecotype Ler, both grown to Boyes scale 1.04 at VIB, Plant systems biology, Gent, Belgium

2005-01-01 | E-CAGE-10 | biostudies-arrayexpress

Proteomic analysis of fractions of Arabidopsis thaliana proteins captured by immobilized metal affinity chromatography

Project description:Proteins from plant shoot and root tissues were extracted from wild-type Arabidopsis thaliana ecotype Columbia (Col-0). They were enriched on conditioned U(VI)-loaded and U(VI)-free Duolite C467 beads. The enriched proteins were identified and quantified by label-free shotgun proteomics.

2023-02-04 | PXD033354 | Pride

mRNA sequencing of wild type Columbia and serrate-1 globular stage embryos of Arabidopsis thaliana

Project description:Wild type Columbia and serrate-1 globular stage embryos were sequenced in order to profile miRNAs which are expressed in embryogenesis in Arabidopsis thaliana

2017-06-27 | GSE100450 | GEO

Transcriptional characterization of Arabidopsis thaliana seeds treated with a red- or far red-light pulse

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of imbibed Arabidopsis thaliana Columbia-0 ecotype seeds that were treated with a 20 min red or far red pulse. The red-light pulse induces germination.

2019-07-10 | GSE134019 | GEO

Expression data from Oryza sativa and Arabidopsis thaliana

Project description:In this study, we used a cross-species network approach to uncover nitrogen (N)-regulated network modules conserved across a model and a crop species. By translating gene network knowledge from the data-rich model Arabidopsis (Arabidopsis thaliana, ecotype Columbia-0) to a crop, rice (Oryza sativa spp. japonica (Nipponbare)), we identified evolutionarily conserved N-regulatory modules as targets for translational studies to improve N use efficiency in transgenic plants.

2015-06-10 | GSE38102 | GEO

Expression data of glutathione-fed Arabidopsis thaliana

Project description:To comprehensively investigate the effects of glutathione on the gene expression, the microarray analysis was performed in the glutathione-fed wild-type Arabidopsis thaliana. Wild-type Arabidopsis (ecotype Columbia-0) were fed with 1 mM oxidized glutathione (GSSG) and 2 mM reduced glutathione (GSH) for comparison at equal nitrogen equivalents. To examine the effects of glutathione other than nitrogen at equal nitrogen equivalents, plants were fed with 3 mM NH4NO3. Plants grown by water were used as a control.

2023-08-01 | GSE228403 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data