Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paphia malabarica isolate:PM | breed:Eukaryotic

ABSTRACT: De novo Transcriptome assembly of Paphia malabarica

PROVIDER: PRJNA1177681 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31127582_1.fastq.gz	Fastqsanger.gz
	SRR31127582_2.fastq.gz	Fastqsanger.gz
	SRR31127583_1.fastq.gz	Fastqsanger.gz
	SRR31127583_2.fastq.gz	Fastqsanger.gz
	SRR31127584_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Translatome and transcriptome analyses reveal novel small peptides enhance rice herbicide resistance

Project description:We combined multi-omics approaches including de novo transcriptome assembly, ribosome profiling and MS-based peptidomics to study the global role of mRNA translation and small ORFs (sORFs) in rice herbicide resistant mutant.

2021-05-11 | PXD025927 |

SRA of transcriptome of Hevea brasiliensis

Project description:We first report the use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly to gain insight into the wide range of transcriptome of Hevea brasiliensis. The output of sequenced data showed that more than 12 million sequence reads with average length of 90nt were generated. Totally 48,768 unigenes (mean size = 488 bp) were assembled through transcriptome de novo assembly, which represent more than 3-fold of all the sequences of Hevea brasiliensis deposited in the GenBank. Assembled sequences were annotated with gene descriptions, gene ontology and clusters of orthologous group terms. Total 37,373 unigenes were successfully annotated and more than 10% of unigenes were aligned to known proteins of Euphorbiaceae. The unigenes contain nearly complete collection of known rubber-synthesis-related genes. Our data provides the most comprehensive sequence resource available for study rubber tree and demonstrates the availability of Illumina sequencing and de novo transcriptome assembly in a species lacking genome information. The transcriptome of latex and leaf in Hevea brasiliensis

2011-09-01 | E-GEOD-26514 | biostudies-arrayexpress

Transcriptome profiles of sousa chinensis leucocyte

Project description:de novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome for functional genomic analysis

2013-08-30 | E-MTAB-1748 | biostudies-arrayexpress

Deciphering m6A dynamics at single-base level during planarian anterior-posterior (AP) axis specification [mRNA]

Project description:We accomplished de novo transcriptome assembly for planarian Dugesia japonica.

2023-09-29 | GSE216411 | GEO

Heterodera glycines isolate:PA3

Project description:Heterodera glycines de novo transcriptome assembly

| PRJNA415980 | ENA

10x Genomics Chromium WGS of Tursiops Aduncus

Project description:This data and additional PacBio Sequel data were collected from the same individual for a de-novo genome assembly

2022-01-01 | E-MTAB-7310 | biostudies-arrayexpress

PacBio Sequel WGS of Tursiops Aduncus

Project description:This data and additional 10x Genomics Chromium data were collected from the same individual for a de-novo genome assembly

2022-01-01 | E-MTAB-7308 | biostudies-arrayexpress

RNA-seq experiment of the amoeboflagellate Orciraptor agilis feeding on Mougeotia sp.

Project description:In this study transcriptomic data of three life history stages of Orciraptor agilis was generated: 1) Gliding cells in absence of food ('gliding'), 2) Cells attached to the cell wall of its algal prey during perforation ('fattacking'), 3) Cells after acquisition of the algal plastid material ('digesting'). Furthermore, RNA-seq of the algal prey Mougeotia sp. was also performed. A de novo transcriptome assembly of the algal reads was performed in order to identify and substract algal reads of the Orciraptor samples by mapping the Orciraptor reads to the algal transcriptome. After this filtering step the remaining Orciraptor reads from all libraries were pooled for a de novo transcriptome assembly of Orciraptor agilis. This transcriptome was the basis for a comparative transcriptomic study in which transcript expression was compared between the three life history stages.

2022-06-13 | E-MTAB-11291 | biostudies-arrayexpress

Zhang2020 - Draft metabolic reconstruction model of Atlantic cod liver generated from gadMorTrinity and iHepatocyte2322

Project description:This is an auto-generated model with COBRA Matlab toolbox. The gadMorTrinigy de novo Trinity transcript assembly and peptide sequences are available at https://doi.org/10.6084/m9.figshare.c.5168303.v2

2020-10-26 | MODEL2010090002 | BioModels

Changium smyrnioides isolate:Njucmqhmu20190501 | breed:Eukaryotic breed

Project description:Changium smyrnioides transcriptome sequencing and assembly

| PRJNA769073 | ENA