Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The sediment of the Southern Ocean

ABSTRACT: the sediment of the Southern Ocean Raw sequence reads

PROVIDER: PRJNA1180744 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR31213302_1.fastq.gz	Fastqsanger.gz
	SRR31213302_2.fastq.gz	Fastqsanger.gz
	SRR31213303_1.fastq.gz	Fastqsanger.gz
	SRR31213303_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Southern ocean mesocosm metaproteomics

Project description:Mesocosms (600 L) were deployed at the Southern Ocean Time Series (SOTS) in Austral late summer during a high nutrient, low chlorophyll period. One mesocosm represented control, present-day conditions (high nutrients/low temperature/low pCO2/low Fe/low irradiance), while the other was amended to represent a projected 2100 scenario (low nutrients/high temperature/high pCO2/high Fe/high irradiance). Approximately 2 L were filtered from the mesocosms onto 5 µm filters at Days 0, 2, 4, and 7 of the incubation.

2022-10-26 | PXD021185 | Pride

Open ocean and marine sediment

Project description:Open ocean and marine sediment Raw sequence reads

| PRJNA423041 | ENA

Raw sequences reads of S37 eDNA metabarcoding in the Southern Ocean

Project description:Raw sequences reads of S37 eDNA metabarcoding in the Southern Ocean Raw sequence reads

| PRJNA939976 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

16S rRNA sample isolate from ocean sediment

Project description:16S rRNA sample isolate from ocean sediment Raw sequence reads

| PRJNA939928 | ENA

Seasonal RNAseq of Antarctic krill, Euphausia superba, from three different latitudinal regions of the Southern Ocean

Project description:The experiment aimed to investigate seasonal and regional differences in gene expression in Antarctic krill in three different latitudinal regions of the Southern Ocean with variable photoperiodic conditions: South Georgia (54°S), South Orkneys/Bransfield Strait (60°S-63°S) and Lazarev Sea (62°S -66°S). An RNAseq approach was used to test for (1) seasonal differences in gene expression between summer and winter krill from each region, and (2) regional differences in gene expression between the three different regional krill samples from each season. The RNAseq data was analysed with the goal to identify potential seasonal target genes with regulatory functions in the seasonal life cycle of Antarctic krill, focussing on genes related to regulation, reproduction, development and visual perception.

2020-08-12 | E-MTAB-7467 | biostudies-arrayexpress

marine sediment metagenome

Project description:Ocean sediment Raw sequence reads

| PRJNA283741 | ENA

Ocean sample

Project description:Ocean sample Raw sequence reads

| PRJNA630852 | ENA

south ocean

Project description:south ocean Raw sequence reads

| PRJNA533153 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

2012-11-11 | E-GEOD-25345 | biostudies-arrayexpress