Project description:Triticum aestivum leaves were collected under heat stress compared to non stressed plants during anthesis stage to assay peroxiosme biogenesis genes (pex11.3, pex11.4, Fis1A, DRP5B), antioxdant gens (CAT and SOD), and heat shock proteins (HSP90, and HSP101)

2026-03-28 | GSE326218 | GEO

Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived Triticum aestivum transcriptome (RNA-seq) profiling methods and to evaluate genotypes associated with resistance against the Wheat dwarf virus. Methods: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated by deep sequencing, in four replicates, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows–Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks. qRT–PCR validation was performed using TaqMan and SYBR Green assays. Conclusions: Our study represents the first detailed analysis of Triticum aestivum transcriptomes, with biologic replicates, generated by RNA-seq technology. The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Our results show that NGS offers a comprehensive and more accurate quantitative and qualitative evaluation of mRNA and miRNA content within a cell or tissue. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions.

2023-04-04 | GSE192518 | GEO

Triticum aestivum

Project description:Triticum aestivum cv. fielder infected with Fusarium graminearum raw sequence reads

| PRJNA307989 | ENA

RNA-seq analysis of bread wheat grown under hydroponic Fe deficient conditions

Project description:Bread wheat (Triticum aestivum L., cv. Fielder) plants were grown under iron (Fe) deficient hydroponic conditions to analyise transcriptomic changes in leaf and root tissue.

2024-12-11 | GSE283676 | GEO

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