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Single-cell RNA sequencing of human LECs derived from human skin and subcutaneous adipose tissue [CITE-Seq]

ABSTRACT: Single-cell RNA sequencing of human LECs derived from human skin and subcutaneous adipose tissue [CITE-Seq]

PROVIDER: PRJNA1188555 | ENA |

REPOSITORIES: ENA

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Single-cell RNA sequencing of human LECs derived from human skin and subcutaneous adipose tissue [CITE-Seq]

Project description:We performed single-cell RNA sequencing (10X) on human lymphatic endothelial cells (LECs) isolated from human skin and subcutaneous adipose tissue. The goal was to analyze the different sub-populations of LECs present in those tissues (e.g. capillary, pre-collector, collector), which would give new insights into the human biology of lymphatics vessels present in skin and adipose tissue.

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LETR1 (LINC01197) RNA pull-down in human LECs followed by LC-MSMS

Project description:Recent studies have revealed the importance of long noncoding RNAs (lncRNAs) as tissue-specific regulators of gene expression. There is ample evidence that distinct types of vasculature undergo tight transcriptional control to preserve their structure, identity, and functions. We determined, for the first time, the global lineage-specific lncRNAome of human dermal blood and lymphatic endothelial cells (BECs and LECs), combining RNA-Seq and CAGE-Seq. A subsequent genome-wide antisense oligonucleotide-knockdown profiling of two BEC- and two LEC-specific lncRNAs identified LETR1 as a critical gatekeeper of the global LEC transcriptome. Deep RNA-DNA and RNA-protein interaction studies, and phenotype rescue analyses revealed that LETR1 is a nuclear trans-acting lncRNA modulating, via key epigenetic factors, the expression of essential target genes governing the growth and migratory ability of LECs. Together, our study provides new evidence supporting the intriguing concept that every cell type expresses precise lncRNA signatures to control lineage-specific regulatory programs.

2020-12-21 | PXD018578 | Pride

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