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Pekania pennanti

ABSTRACT: Pekania pennanti (fisher) genomic and transcriptomic data

PROVIDER: PRJNA1188600 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR31569549_subreads.fastq.gz	Fastqsanger.gz
	SRR32562200_subreads.fastq.gz	Fastqsanger.gz
	SRR33686694_1.fastq.gz	Fastqsanger.gz
	SRR33686694_2.fastq.gz	Fastqsanger.gz

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Pekania pennanti

Project description:Pekania pennanti (fisher), mMarPen1

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Project description:Pekania pennanti (fisher) genome assembly, mMarPen1, alternate haplotype

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Project description:Pekania pennanti (fisher) genome assembly, mMarPen1, principal haplotype

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Acceleration Data Reveal Highly Individually Structured Energetic Landscapes in Free-Ranging Fishers (Pekania pennanti).

Project description:Investigating animal energy expenditure across space and time may provide more detailed insight into how animals interact with their environment. This insight should improve our understanding of how changes in the environment affect animal energy budgets and is particularly relevant for animals living near or within human altered environments where habitat change can occur rapidly. We modeled fisher (Pekania pennanti) energy expenditure within their home ranges and investigated the potential environmental and spatial drivers of the predicted spatial patterns. As a proxy for energy expenditure we used overall dynamic body acceleration (ODBA) that we quantified from tri-axial accelerometer data during the active phases of 12 individuals. We used a generalized additive model (GAM) to investigate the spatial distribution of ODBA by associating the acceleration data to the animals' GPS-recorded locations. We related the spatial patterns of ODBA to the utilization distributions and habitat suitability estimates across individuals. The ODBA of fishers appears highly structured in space and was related to individual utilization distribution and habitat suitability estimates. However, we were not able to predict ODBA using the environmental data we selected. Our results suggest an unexpected complexity in the space use of animals that was only captured partially by re-location data-based concepts of home range and habitat suitability. We suggest future studies recognize the limits of ODBA that arise from the fact that acceleration is often collected at much finer spatio-temporal scales than the environmental data and that ODBA lacks a behavioral correspondence. Overcoming these limits would improve the interpretation of energy expenditure in relation to the environment.

| S-EPMC4739643 | biostudies-literature

xgStePenn6

Project description:Steromphala pennanti, genomic and transcriptomic data

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Data from camera surveys identifying co-occurrence and occupancy linkages between fishers (Pekania pennanti), rodent prey, mesocarnivores, and larger predators in mixed-conifer forests.

Project description:These data provide additional information relevant to the frequency of fisher detections by camera traps, and single-season occupancy and local persistence of fishers in small patches of forest habitats detailed elsewhere, "Landscape Fuel Reduction, Forest Fire, and Biophysical Linkages to Local Habitat Use and Local Persistence of Fishers (Pekania pennanti) in Sierra Nevada Mixed-conifer Forests" [10]. The data provides insight on camera trap detections of 3 fisher predators (bobcat [Lynx rufus]). Coyote [Canis latrans], mountain lion [Puma concolor], 5 mesocarnivores in the same foraging guild as fishers (gray fox [Urocyon cinereoargenteus]) ringtail [Bassariscus astutus], marten [Martes americana], striped skunk [Mephitis mephitis] spotted skunk [Spilogale gracilis], and 5 Sciuridae rodents that fishers consume as prey (Douglas squirrel [Tamiasciurus douglasii]), gray squirrel [Sciurus griseus], northern flying squirrel [Glaucomys sabrinus], long-eared chipmunk [Neotamias quadrimaculatus], California ground squirrel [Spermophilus beecheyi]. We used these data to identify basic patterns of co-occurrence with fishers, and to evaluate the relative importance of presence of competing mesocarnivores, rodent prey, and predators for fisher occupancy of small, 1 km(2) grid cells of forest habitat.

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xgStePenn6

Project description:Steromphala pennanti, genomic assembly, xgStePenn6

| PRJEB94479 | ENA

Project description:Steromphala pennanti

| PRJEB94477 | ENA

Thermo Fisher Scientific OncoScan expression array data for undifferentiated uterine sarcomas (CNV)

Project description:Thermo Fisher Scientific OncoScan expression array data for undifferentiated uterine sarcoma

2019-08-23 | GSE119042 | GEO