Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ChIP-seq of histone modifications in Arabidopsis thaliana Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5 using H2AZ, H3, H3K4me3 and H3K27me3 antibodies as well as input DNA control

ABSTRACT: ChIP-seq of histone modifications in Arabidopsis thaliana Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5 using H2AZ, H3, H3K4me3 and H3K27me3 antibodies as well as input DNA control

PROVIDER: PRJNA1191864 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome data (mRNA-seq) for Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5.

Project description:Transcriptome data (mRNA-seq) for Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5.

| PRJNA1191873 | ENA

ChIP-seq of histone modifications in Arabidopsis thaliana Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5 using H2AZ, H3, H3K4me3 and H3K27me3 antibodies as well as input DNA control

Project description:To investigate the distribution patterns of histone modifications across the genome in different mutants, we analyzed the data derived from ChIP-seq.

2025-07-04 | GSE283110 | GEO

Transcriptome data (mRNA-seq) for Col-0, clf-29, elf6-126,ino80-5 and elf6-126/ino80-5.

Project description:Gene expression profiling analysis of RNA-seq data for Arabidopsis thaliana.

2025-07-04 | GSE283105 | GEO

CLF Pulldown

Project description:CLF binding sites Keywords: ChIP-chip

2009-01-01 | GSE7065 | GEO

Wide-type, brm, clf, and brm clf mutant seedlings

Project description:Wide-type, brm, clf, and brm clf mutant seedlings

| PRJNA232492 | ENA

H2AZ Orchestrates Neural Progenitor Cell Proliferation and Differentiation via Setd2-mediated H3K36me3 Modification [ChIP-seq]

Project description:We report the genomic characterization of H2AZ binding at E13 brain. ChIP experiment was performed with antibody against H2AZ. we generated genome-wide characterization of H2AZ occupancy and find that H2AZ was prone to bind the promoter and the intergenic regions. The genomic localization of H2AZ might reveal its essential role during early neurogenesis. Gene ontology (GO) analysis, revealing that these genes occupied by H2AZ play roles in the cellular metabolic process, DNA replication, cell cycle, and neuron development and so on. Detailed investigation of the binding profiles show that direct binding of NkX2-4 by H2AZ. This study provides a framework for the epigenetic regulation of H2AZ in embryonic neurogenesis.

2017-05-29 | GSE99348 | GEO

Knockdown of Ino80 complex subunits Actr5, Ies6, and Ino80 in RD cells

Project description:INO80 complex is an ATPase-dependent chormatin remodeling complex, which regulates various DNA metabolic processes such as DNA replication and repair. Additionally, INO80 complex also contributes to the regulation of gene expression in sterss response and development. In order to investigate the function of INO80 complex in rhabdomyosarcoma, we examined the knockdown of subunits of INO80 complex Actr5, Ies6, and Ino80 in human rhabdomyosarcoma RD cells. As a result, it was found that INO80 complex is involved in the sarcomagenicity and the disregulation of myogenic properties of rhabdomyosarcoma cells.

2022-04-01 | GSE169681 | GEO

Genome-wide profiling of trimethylated histone H3 lysine 27 (H3K27me3) in wide-type, brm, clf, and brm clf mutant seedlings

Project description:By using ChIP-seq, we found that loss of BRM activity in developing seedlings leads to ectopic and increased H3K27me3 deposition at several hundred genes, indicating the critical role of BRM in preventing the inappropriate deposition of this histone mark. Removal of CLF in brm mutant could partcially suppress the increased H3K27me3. Examination of H3K27me3 in 14-day-old wt, brm, clf, and brm clf seedlings. Two biological replicates for each one.

2015-03-09 | E-GEOD-53620 | biostudies-arrayexpress

Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis

Project description:CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Here we profiled Arabidopsis transcriptomes obtained from roots, leaves, flowers and siliques of Col-0 (As described under GEO ID: GSE38612) and clf-28 plants using RNA-seq. Our analysis uncovered 3835 transcription units were up-regulated in clf-28. Compared with ChIP-CHIP data, we found at least 42% of them were associated with H3K27me3. Transcriptom profiling in roots, leaves, flowers and siliques of clf-28 plants.

2015-02-01 | E-GEOD-43983 | biostudies-arrayexpress

Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis

Project description:CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Here we profiled Arabidopsis transcriptomes obtained from roots, leaves, flowers and siliques of Col-0 and clf-28 plants using RNA-seq. Our analysis uncovered 3835 transcription units were up-regulated in clf-28. Compared with H3K27me3 ChIP-CHIP data, we found at least 42% of them were associated with H3K27me3.

2015-02-01 | GSE43983 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data