Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: West Basin lake microbialite metagenomes

PROVIDER: PRJNA1194634 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31660260_1.fastq.gz	Fastqsanger.gz
	SRR31660260_2.fastq.gz	Fastqsanger.gz
	SRR31660261_1.fastq.gz	Fastqsanger.gz
	SRR31660261_2.fastq.gz	Fastqsanger.gz
	SRR31660262_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Project description:West Basin Lake microbialite MAGs compendium

| PRJNA1196970 | ENA

Project description:West Basin lake microbialite 16S rRNA gene sequences

| PRJNA1194668 | ENA

Prussian carp skin mucus proteomics

Project description:Here we provide dataset from a proteomic experiment, using trypsin digestion, and reversed-phase chromatography (RPC) with tandem mass spectrometr (RPC-MS/MS), in order to relatively quantify the protein composition of skin mucus of Prussian carp Carassius gibelio. The main aim of the project is to identify the proteins specifically assotiated with fish inhabits euthophic shallow lakes lake Chany Lake (West Siberia).

2021-05-27 | PXD025974 | Pride

Project description:Soil microbiome in west Taihu Lake basin

| PRJNA817091 | ENA

Psychrotolerant bacterium Sphingomonas glacialis AAP5 harvests light energy using both proton-pumping xanthorhodopsins and bacteriochlorophyll-based reaction centers

Project description:Bacterium Sphingomonas glacialis AAP5 isolated from the alpine lake Gossenköllesee contains genes for anoxygenic phototrophy as well as proton-pumping xanthorhodopsin. Here we show that AAP5 expresses xanthorhodopsin when illuminated at temperatures below 16°C. In contrast bacteriochlorophyll-containing reaction centers are expressed between 4 and 22°C in the dark. Thus, cells grown at lower temperature under natural light-dark cycle produced both photosystems. The purified xanthorhodopsin contains carotenoid nostoxanthin serving as an auxiliary antenna and performs the standard photocycle. The xanthorhodopsin-containing cells reduced upon illumination their respiration, increased their ATP synthesis and produced more biomass. This documents that the harvested light energy was utilized in the metabolism, which can represent a competitive advance under carbon-limiting conditions. The presence of Sphingomonas bacteria with dual phototrophy was verified in the metagenomes collected from lake Gossenköllesee. This unique trait may represent a metabolic advantage in alpine lakes where photoheterotrophic organisms facelimited organic substrates, low temperature, and extreme changes in irradiance.

2022-05-10 | GSE196609 | GEO

Diel cycles of gene expression in oligotrophic, dystrophic, and eutrophic lakes to identify new gene functions and dissect carbon cycling metabolisms

Project description:Aquatic microbial communities contain a vast amount of genetic diversity and we have much to learn about how this manifests to functional diversity. Existing long-term time series data includes 16S tags, metagenomes, single amplified genomes (SAGs), and genomes from metagenomes (GFMs). Information about functional diversity and metabolic capabilities is often unavailable. The study sites include three lakes that are the subject of intense study through the North Temperate Lakes Long Term Ecological Research site: Sparkling Lake (oligotrophic), Lake Mendota (eutrophic), and Trout Bog Lake (dystrophic). The work (proposal:https://doi.org/10.46936/10.25585/60000947) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093272 | MassIVE

stromatolite metagenome

Project description:Great Salt Lake microbialite Raw sequence reads

| PRJNA305194 | ENA

Proteome of mature flatworm Triaenophorus crassus (Bothriocephalidea:Triaenophoridae) from pike Esox lucius

Project description:Adult pike Esox lucius was caught in the end of summer (August, 2020) in Teletskoye Lake (Altai region, west Siberia, Russia, 51°79’10’’ N, 87°30’43’’E). Parasite (Triaenophorus crassus) was retrieved from the intestine of pike and immediately frozen in liquid nitrogen. After that, the sample was lyophilized and sent in ice (-20 °C) to the Group of mass spectrometry of Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS (Moscow, Russia) where further analysis was performed.

2021-10-28 | PXD028112 | Pride

Great Salt Lake experimental & environmental DNA

Project description:Great Salt Lake microbialite recovery project (raw sequence reads)

| PRJNA916983 | ENA

Flathead Lake

Project description:Flathead Lake metagenomes

| PRJNA948362 | ENA