Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microcosm Metatranscriptome Data

PROVIDER: PRJNA1203232 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31851717_1.fastq.gz	Fastqsanger.gz
	SRR31851717_2.fastq.gz	Fastqsanger.gz
	SRR31851718_1.fastq.gz	Fastqsanger.gz
	SRR31851718_2.fastq.gz	Fastqsanger.gz
	SRR31851719_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Project description:Microcosm Metatranscriptome Data

| PRJNA1203294 | ENA

Project description:Microcosm Metatranscriptome Data_Day0

| PRJNA1203377 | ENA

Project description:Microcosm Metatranscriptome Data_Day3

| PRJNA1203296 | ENA

Project description:Microcosm Metatranscriptome Data_Week2

| PRJNA1203300 | ENA

Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment

Project description:Sequencing the metatranscriptome can provide information about the response of organisms to varying environmental conditions. We present a methodology for obtaining random whole-community mRNA from a complex microbial assemblage using Pyrosequencing. The metatranscriptome had, with minimum contamination by ribosomal RNA, significant coverage of abundant transcripts, and included significantly more potentially novel proteins than in the metagenome. Keywords: metatranscriptome, mesocosm, ocean acidification

2008-02-08 | GSE10119 | GEO

Comparative genomics of Staphylococcus aureus and the application of a “pan-genome” for assigning RNA-Seq transcript reads from divergent strains and in vivo human nasal samples

Project description:in vitro comparison between two MRSA grown in rich (BHI) and poor media (SNM), compared with the nasal metatranscriptome reads of S. aureus. Global expression profile of two MRSA strains of S.aureus harvested in two different growth phases and compared with a metatranscriptome nose sample of a S. aureus carrier.

2015-01-05 | E-GEOD-56294 | biostudies-arrayexpress

Metatranscriptomic analysis of an anaerobic ammonium oxidizing community dominated by Kuenenia stuttgartiensis

Project description:We compiled a metatranscriptome by extracting total RNA (including ribosomes), reverse transcription and solexa sequencing. We obtained quantitative data on the transcription of each orf to assess the importance of each orf to the metabolism of Kuenenia stuttgartiensis

2010-03-25 | GSE15408 | GEO

Metatranscriptomic analysis of an anaerobic ammonium oxidizing community dominated by Kuenenia stuttgartiensis

2010-03-25 | E-GEOD-15408 | biostudies-arrayexpress

Survival of Salmonella enterica serotype Typhi in the water microcosm transcriptome response

Project description:Investigation of the transcriptional response of S. Typhi strain BRD948 during adaptation to the watery microcosm using RNA sequencing. http://www.sanger.ac.uk/resources/downloads/bacteria/salmonella.html This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-01-07 | E-ERAD-205 | biostudies-arrayexpress

Metatranscriptome analysis reveals the putative venom toxin repertoire of the biofouling hydroid Ectopleura larynx

Project description:Metatranscriptome analysis reveals the putative venom toxin repertoire of the biofouling hydroid Ectopleura larynx

2023-09-29 | E-MTAB-13150 | biostudies-arrayexpress