Project description:we report a transcriptome-wide comparative investigation between surface and cave species in Sinocyclocheilus. De novo transcriptome assemblies were performed on surface and cave species; then the Sinocyclocheilus contigs were annotated with Gene Ontology. RNA-Seq assays revealed reduced transcription of a series of visual phototransduction and retinal disease related genes in cave-dwelling species compared with surface species. Degeneration of the retina in Sinocyclocheilus cavefish might occur in a lens-independent way by the down-regulation of several transcriptional factors, which have direct roles in retina development and maintenance, such as crx, rorb and Wnt pathway members.

2013-03-31 | GSE40446 | GEO

Aparapotamon grahami

Project description:Aparapotamon grahami Genome sequencing and assembly

| PRJNA768259 | ENA

Sinocyclocheilus

Project description:Sinocyclocheilus Genome sequencing and assembly

| PRJNA274017 | ENA

Project description:Sinocyclocheilus grahami genome

| PRJNA702560 | ENA

Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish

2013-03-31 | E-GEOD-40446 | biostudies-arrayexpress

Oreochromis grahami