Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pediococcus siamensis strain:LMG 24279

ABSTRACT: Pediococcus siamensis strain:LMG 24279 Genome sequencing

PROVIDER: PRJNA1208221 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR32075488_1.fastq.gz	Fastqsanger.gz
	SRR32075489_1.fastq.gz	Fastqsanger.gz
	SRR32075489_2.fastq.gz	Fastqsanger.gz
	SRR33155833_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Pediococcus damnosus LMG 28219

Project description:Pediococcus damnosus LMG 28219 Genome sequencing and assembly

| PRJNA234374 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Bacillus siamensis strain:IMD4001

Project description:Bacillus siamensis strain:IMD4001 Genome sequencing

| PRJNA730366 | ENA

Bacillus siamensis strain:IMD4036

Project description:Bacillus siamensis strain:IMD4036 Genome sequencing

| PRJNA937431 | ENA

Bacillus siamensis strain:JSZ06

Project description:Bacillus siamensis strain:JSZ06 Genome sequencing

| PRJNA1070630 | ENA

Bacillus siamensis strain:B1

Project description:Bacillus siamensis strain:B1 Genome sequencing