Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Canine Parvovirus Diversity in Maricopa County Wastewater: July 2022-June 2023

PROVIDER: PRJNA1218775 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32215360_1.fastq.gz	Fastqsanger.gz
	SRR32215361_1.fastq.gz	Fastqsanger.gz
	SRR32215362_1.fastq.gz	Fastqsanger.gz
	SRR32215363_1.fastq.gz	Fastqsanger.gz
	SRR32215364_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Project description:Enteroviruses detected in wastewater in Maricopa county, Arizona, USA July 2022 - June 2023

| PRJNA1052746 | ENA

Pathogen dynamics and discovery of novel viruses and enzymes by deep nucleic acid sequencing of wastewater

Project description:Nucleic acids in wastewater provide a rich source of data for detection and surveillance of microbes. We have longitudinally collected 116 RNA samples from a wastewater treatment plant in Berlin/Germany, from March 2021 to July 2022, and 24 DNA samples from May to July 2022. We tracked human astroviruses, enteroviruses, noroviruses and adenoviruses over time to the level of strains or even individual nucleotide variations, showing how detailed human pathogens can be observed using wastewater. For respiratory pathogens, a broad enrichment panel enabled us to detect waves of RSV, influenza, or common cold coronaviruses in high agreement with clinical data. By applying a profile Hidden Markov Model-based search for novel viruses, we identified more than 100 thousand novel transcript assemblies likely not belonging to known virus species, thus substantially expanding our knowledge of virus diversity. Phylogenetic analysis is shown for bunyaviruses and parvoviruses. Finally, we identify Hundreds of novel protein sequences for CRISPR-associated proteins such as Transposase B, a class of small RNA-guided DNA editing enzymes. Taken together, we present a longitudinal and deep investigation into wastewater-derived genomic sequencing data that underlines the value of sewage surveillance for public health, planetary virome research, and biotechnological potential.

2023-04-13 | GSE228220 | GEO

MicroRNA expression profiling in the adult offspring of rats with periodontal disease

Project description:The present study investigated whether maternal periodontal disease modifies the microRNA expression profile in adult offspring. *************************************************************** This study was supported by the São Paulo Research Foundation (FAPESP) [grant #2019/04183-9; #2022/08872-6; #2023/03786-7; #2023/12488-0; #2023/01400-4] and CNPq [grant 151151/2023-7], São Paulo, SP, Brazil. The grants #2019/04183-9; #2023/12488-0; #2023/01400-4 and 151151/2023-7 were awarded to the author Maria Sara de Lima Coutinho Mattera. The grant #2022/08872-6 was awarded to Heloisa Macedo Sampaio. The grant #2023/03786-7 was awarded to Gabriele Fernandes Baliero. ***************************************************************

2024-12-28 | GSE281235 | GEO

Gut health in multiple joint osteoarthritis: a multimodal investigation in humans and pet dogs

Project description:The Gut health in multiple joint osteoarthritis (MJOA) study leverages data from parallel community-based cohorts in humans and in pet dogs to elucidate the role of altered microbiota in MJOA. One hundred Johnston County Health Study human participants were 35 to 70 years of age at enrollment (2022-2023), self-identified as Hispanic, White, or Black, and lived in Johnston County, North Carolina. Demographic, clinical information, multiple joint radiographs, and stool samples for microbiome profiling by 16S rRNA gene sequencing were obtained from all participants. Similar data were collected from an independent group of pet dogs (N=115) from the local community, at the North Carolina State University (NCSU) College of Veterinary Medicine. The central hypothesis of the study is that intestinal permeability, with or without dysbiosis, is a major driver in the development and worsening of MJOA.

2025-04-01 | GSE293105 | GEO

Copy number variation analysis of 18,000 fetuses in southern China

Project description:Chromosomal microarray analysis (CMA) in prenatal diagnosis detects copy number variations (CNVs) in many fetuses; however, the low penetrance and phenotypic diversity of CNVs complicate genetic counseling, resulting in limited understanding of intrauterine ultrasound phenotypes linked to CNVs. In a retrospective analysis of 25,000 cases at Fujian Maternal and Child Health Hospital, 18,000 pregnant women underwent SNP array testing (December 2015 to June 2023).

2024-08-14 | GSE274505 | GEO

laser-captured chondrocyte transcriptomes from cranial base

Project description:similar methods as in Gomez-Picos et al. (2022) and Nguyen et al. (2023)

2023-12-18 | GSE249932 | GEO

Project description:Canine Parvovirus 2C identified in dog feces from poop bags collected from outdoor waste bins in Arizona USA, June 2022.

| PRJNA923767 | ENA

RNAseq of CD4 T cells from 83 individuals with musculoskeletal compains

Project description:RNAseq of CD4 cells from 83 individuals with musculoskeletal complains (age 51y, range 19-86. male 22%) were collected at the Rheumatology Clinic during 2022-2023 . Cells were activated with anti-CD3 for 48 hours.

2025-01-02 | GSE282517 | GEO

Project description:Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023

| PRJNA1110039 | ENA

SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023

Project description:SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023

| PRJEB76651 | ENA