Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Engystomops pustulosus (Tungara frog) transcriptome, aEngPut1

PROVIDER: PRJNA1218819 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32217659_1.fastq.gz	Fastqsanger.gz
	SRR32217659_2.fastq.gz	Fastqsanger.gz
	SRR32217660_1.fastq.gz	Fastqsanger.gz
	SRR32217660_2.fastq.gz	Fastqsanger.gz
	SRR32217661_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Project description:Engystomops pustulosus (Tungara frog) transcriptome, aEngPut3

| PRJNA1218821 | ENA

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut4

| PRJNA1144444 | ENA

Engystomops pustulosus isolate:aEngPut4

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut4, maternal haplotype

| PRJNA1135147 | ENA

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut1, sequence data

| PRJNA1145945 | ENA

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut3, sequence data

| PRJNA1145947 | ENA

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut4, sequence data

| PRJNA1145948 | ENA

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut2, sequence data

| PRJNA1145946 | ENA

Engystomops pustulosus

Project description:Engystomops pustulosus (Tungara frog) genome, aEngPut4, paternal haplotype

| PRJNA1135146 | ENA

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

Project description:Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably the genus Xenopus. Here we report a high-quality reference genome sequence for the western clawed frog, Xenopus tropicalis, along with draft chromosome-scale sequences of three distantly related emerging model frog species, Eleutherodactylus coqui, Engystomops pustulosus and Hymenochirus boettgeri. Frog chromosomes have remained remarkably stable since the Mesozoic Era, with limited Robertsonian (i.e., centric) translocations and end-to-end fusions found among the smaller chromosomes. Conservation of synteny includes conservation of centromere locations, marked by centromeric tandem repeats associated with Cenp-a binding, surrounded by pericentromeric LINE/L1 elements. We explored chromosome structure across frogs, using a dense meiotic linkage map for X. tropicalis and chromatin conformation capture (Hi-C) data for all species. Abundant satellite repeats occupy the unusually long (~20 megabase) terminal regions of each chromosome that coincide with high rates of recombination. Both embryonic and differentiated cells show reproducible association of centromeric chromatin, and of telomeres, reflecting a Rabl-like configuration. Our comparative analyses reveal 13 conserved ancestral anuran chromosomes from which contemporary frog genomes were constructed.

2022-03-30 | GSE199671 | GEO

Engystomops pustulosus

Project description:Engystomops pustulosus Organism overview

| PRJNA894546 | ENA