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Gene regulatory consequecnes of loss of Kdm1a in the kidney [RNA-Seq]

ABSTRACT: Gene regulatory consequecnes of loss of Kdm1a in the kidney [RNA-Seq]

PROVIDER: PRJNA1224255 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR32360217_1.fastq.gz	Fastqsanger.gz
	SRR32360217_2.fastq.gz	Fastqsanger.gz
	SRR32360218_1.fastq.gz	Fastqsanger.gz
	SRR32360218_2.fastq.gz	Fastqsanger.gz
	SRR32360219_1.fastq.gz	Fastqsanger.gz

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Gene regulatory consequecnes of loss of Kdm1a in the kidney [RNA-Seq]

Project description:Histone methyltransferases and demethylases play crucial roles in gene regulation and are vital for the proper functioning of multiple tissues. In this study, we investigated the functions of Kdm1a by employing a renal progenitor-specific deletion during kidney development and evaluated global differences in gene expression between control and Kdm1a conditional knockout kidneys using RNA sequencing (RNA-seq).

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GR and LSD1/KDM1A-targeted gene activation requires selective H3K4me2 demethylation at enhancers

Project description:KDM1A-mediated H3K4 demethylation is a well-established mechanism underlying transcriptional gene repression, but its role in gene activation is less clear. Here we report a critical function and novel mechanism of action of KDM1A in glucocorticoid receptor (GR)-mediated gene transcription. Biochemical purification of the nuclear GR complex revealed KDM1A as an integral component. In cell-free assays, GR modulates KDM1A-catalyzed H3K4 progressive demethylation by limiting loss of H3K4me1. Similarly, in cells KDM1A binds to most GR binding sites where it removes preprogrammed H3K4me2 but leaves H3K4me1 untouched. Blocking KDM1A catalytic activity prevents H3K4me2 removal, severely impairs GR binding to chromatin, and dysregulates GR-targeted genes. Taken together, these data suggest KDM1A-mediated H3K4me2 demethylation at GRBSs promotes GR binding and plays an important role in glucocorticoid-induced gene transcription, offering a new mechanism contributing to nuclear receptor mediated gene activation.

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