Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil samples from blueberry plantation

ABSTRACT: Soil samples from blueberry plantation Raw sequence reads

PROVIDER: PRJNA1227142 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32503500_1.fastq.gz	Fastqsanger.gz
	SRR32503500_2.fastq.gz	Fastqsanger.gz
	SRR32503501_1.fastq.gz	Fastqsanger.gz
	SRR32503501_2.fastq.gz	Fastqsanger.gz
	SRR32503502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 146

Similar Datasets

Soil samples from blueberry plantation

Project description:Soil samples from blueberry plantation Raw sequence reads

| PRJNA1226972 | ENA

Plantation Soil

Project description:Plantation Soil Raw sequence reads

| PRJNA810248 | ENA

Plantation soil fungi

Project description:Plantation soil fungi Raw sequence reads

| PRJNA900389 | ENA

blueberry rhizosphere soil

Project description:blueberry rhizosphere soil Raw sequence reads

| PRJNA1102520 | ENA

Tea plantation soil sample

Project description:Tea plantation soil sample Raw sequence reads

| PRJNA1104766 | ENA

Soil microbes of plantation

Project description:Soil microbes of plantation Raw sequence reads

| PRJNA900373 | ENA

tea plantation soil

Project description:tea plantation soil Assembly

| PRJNA1061320 | ENA

Korean pine plantation soil fungus genome

Project description:Korean pine plantation soil fungus genome Raw sequence reads

| PRJNA938591 | ENA

tea plantation soil from different province

Project description:tea plantation soil from different province Raw sequence reads

| PRJNA722620 | ENA

Analysis of Transcriptomics and Rhizosphere Fungal Diversity in Different Tissues of Blueberry under Cadmium Stress

Project description:In this study, blueberry transcriptomics and rhizosphere fungal diversity were analyzed by simulated potting method to treat blueberries with Cd stress, and the content of Fe, Mn, Cu, Zn and Cd in each tissue, soil and DGT of blueberries were determined. , Combined with transcriptomics for correlation analysis. A total of 84374 annotated genes were obtained in blueberry roots, stems, leaves and fruits, of which 3370 DEGs were found, and DEGs in the stem accounted for the highest proportion, totaling 2521. The annotation results show that these DEGs are mainly concentrated in a series of metabolic pathways related to signal transduction, defense and pathogenic response. Blueberries transfer excess Cd from the root to the stem for storage. The stem contains the highest Cd content, which is consistent with the transcriptomics analysis results, while the fruit contains the lowest Cd content. Correlation analysis between heavy metal content and transcriptomics results in each tissue was carried out, and a series of genes related to Cd regulation were screened. The blueberry root system relies on mycorrhiza to absorb nutrients in the soil. The intervention of Cd has severely affected the microflora structure of the blueberry rhizosphere soil. Coniochaetaceae, which is extremely tolerant, has gradually become the dominant population.

2021-08-25 | GSE168446 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data