Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Saimiri boliviensis (Bolivian squirrel monkey) genome, mSaiBol1

PROVIDER: PRJNA1230199 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR32766417_1.fastq.gz	Fastqsanger.gz
	SRR32766417_2.fastq.gz	Fastqsanger.gz
	SRR32766418_1.fastq.gz	Fastqsanger.gz
	SRR32766418_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Project description:Saimiri boliviensis (Bolivian squirrel monkey) genome, mSaiBol1, sequence data

| PRJNA1238019 | ENA

Project description:Saimiri boliviensis (Bolivian squirrel monkey) genome, mSaiBol2, sequence data

| PRJNA1238020 | ENA

Saimiri boliviensis isolate:mSaiBol1

Project description:Saimiri boliviensis (Bolivian squirrel monkey) genome, mSaiBol1, primary haplotype

| PRJNA1221990 | ENA

Saimiri boliviensis isolate:mSaiBol1

Project description:Saimiri boliviensis (Bolivian squirrel monkey) genome, mSaiBol1, alternate haplotype

| PRJNA1221989 | ENA

Saimiri boliviensis boliviensis isolate:100643

Project description:Saimiri boliviensis (squirrel monkey) Genome Sequencing and Assembly

| PRJNA679316 | ENA

Saimiri boliviensis boliviensis strain:Lab Born/Non-Inbred

Project description:Bolivian squirrel monkey genome sequencing

| PRJNA67945 | ENA

Saimiri boliviensis boliviensis

Project description:Saimiri boliviensis boliviensis overview

| PRJNA67971 | ENA

Saimiri boliviensis boliviensis

Project description:Saimiri boliviensis boliviensis RNA Sequencing

| PRJNA163171 | ENA

Saimiri boliviensis

Project description:Saimiri boliviensis overview

| PRJNA269014 | ENA

Transcriptome profiling of Plasmodium vivax in Saimiri monkeys identifies potential ligands for invasion

Project description:Unlike in Asia and Latin America, Plasmodium vivax infections were rare in Sub-Saharan Africa due to the absence of the Duffy blood group antigen (Duffy Antigen), the only known erythrocyte receptor for the P. vivax merozoite invasion ligand, Duffy Binding Protein 1 (DBP1). However, P. vivax infections have been documented in Duffy-negative individuals throughout Africa, suggesting that P. vivax may use ligands other than DBP1 to invade Duffy-negative erythrocytes through other receptors. To identify potential P. vivax ligands, we compared parasite gene expression in Saimiri and Aotus monkey erythrocytes infected with P. vivax Salvador I (Sal I). DBP1 binds Aotus but does not bind to Saimiri erythrocytes, and thus P. vivax Sal I must invade Saimiri erythrocytes independently of DBP1. Comparing RNA sequencing (RNAseq) data for late stage infections in Saimiri and Aotus erythrocytes when invasion ligands are expressed, we identified genes that belong to tryptophan-rich antigen and MSP3 families that were more abundantly expressed in Saimiri infections as compared to Aotus infections. These genes may encode potential ligands responsible for P. vivax infections of Duffy-negative Africans.

2019-04-17 | GSE125284 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data