Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomic insights reveal the microbiome and functional characterization of oral, nasal and cloacal in sea turtles

PROVIDER: PRJNA1232438 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33677514_1.fastq.gz	Fastqsanger.gz
	SRR33677514_2.fastq.gz	Fastqsanger.gz
	SRR33677515_1.fastq.gz	Fastqsanger.gz
	SRR33677515_2.fastq.gz	Fastqsanger.gz
	SRR33677516_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 102

Similar Datasets

Project description:Oral and Cloacal Microbiome of wild sea turtles

| PRJNA678525 | ENA

TurtleBIOME oral cloacal microbiota

Project description:16S rRNA sequencing of cloacal, oral, and tank water microbiota of loggerhead sea turtles

| PRJEB46638 | ENA

TurtleBIOME_endozoic_microbiota_ITS2_2021

Project description:2021 ITS2 sequencing of cloacal, oral, and tank water microbiota of loggerhead sea turtles

| PRJEB62762 | ENA

TurtleBIOME_endozoic_microbiota_16S_2021

Project description:2021 16S rRNA sequencing of cloacal, oral, and tank water microbiota of loggerhead sea turtles

| PRJEB62752 | ENA

E-GEOD-93798

Project description:Transcriptomic and proteomic profiling reveal insights of mesangial cell function in patients with IgA Nephropathy

2025-01-24 | E-GEOD-93798 | ExpressionAtlas

Project description:Oral and cloacal microbiome of cold-stunned Kemp's ridley turtles

| PRJNA690527 | ENA

Project description:Fecal and cloacal bacterial communities of cold-stunned sea turtles

| PRJNA813840 | ENA

LC-MSMS analysis of green sea turtles in Reunion Island

Project description:Human activities and climate change have negatively affected the world's oceans, leading to a 30-60% decline in biodiversity and habitats in coastal ecosystems. Marine turtles, as bioindicator species, accumulate contaminants, including trace elements, due to their extensive migration and long life span. However, there is a lack of data on the abundance of these contaminants and their effects on marine turtles' health. This study focuses on analyzing the muscle proteome of juvenile green sea turtles (Chelonia mydas) from Reunion Island. The ultimate goal was to evaluate whether muscle proteome responds to in-situ mixtures of inorganic contaminants to decipher the possible impacts on individual health, thereby identifying potential new biomarkers for long-term monitoring and conservation efforts.

2025-03-17 | PXD044676 | Pride

Loggerhead sea turtle (Caretta caretta) TMT-based plasma proteomics

Project description:The aim of the study was to monitor and analyse injured and diseased loggerhead sea turtles (Caretta caretta) plasma proteome profiles during their recovery period in rescue centre within different age and recovery period groups, and determine the potential biomarkers that can be used in diagnostics.

2021-12-10 | PXD029569 | Pride

Metaproteomics and metagenomics analysis reveal distinct metabolic and adaptive functions of euphotic and bathypelagic microbial communities in the South China Sea

Project description:Marine microorganisms inhabiting the bathypelagic zone (1000 m - 4000 m) are pivotal to biogeochemical cycling. However, a comprehensive understanding of microbial community structure and their metabolic activities adaptations to the extreme deep-sea conditions remains elusive. In this study, we employed a metaproteomic approach to investigate the protein profiles of microbial communities spanning the surface and bathypelagic layers of the South China Sea (SCS) and performed a comparative analysis with metagenomic data. The metaproteome and metagenome showed low correlation in functional expression but a high correlation at the phylum level. High-abundance genes were more likely to be translated into proteins, with protein over-representation observed in energy conversion and matter transport processes. Short-chain amide porins facilitate substance exchange and maintain cellular homeostasis, enabling Methylococcales to adapt to deep-sea conditions and actively oxidize methane. Flexible energy utilization strategies, such as CO oxidation, enable Propionibacteriales to thrive in deep-sea environments. This study highlights the significance of microbial enzyme resources and offers valuable insights into the adaptations of deep-sea microorganisms, emphasizing their considerable application potential.

2024-12-02 | PXD058504 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data