Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Navigating Methodological Trade-Offs in eDNA Metabarcoding Biodiversity Monitoring: Insights From a Mediterranean Watershed

PROVIDER: PRJNA1232667 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32590800_1.fastq.gz	Fastqsanger.gz
	SRR32590800_2.fastq.gz	Fastqsanger.gz
	SRR32590900_1.fastq.gz	Fastqsanger.gz
	SRR32590900_2.fastq.gz	Fastqsanger.gz
	SRR32591000_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1226

Similar Datasets

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Padarn eDNA: annual time series with eDNA metabarcoding.

Project description:Biodiversity monitoring of a lake ecosystem through eDNA metabarcoding

| PRJEB13009 | ENA

Project description:Monitoring earthworm biodiversity using DNA metabarcoding

| PRJNA783879 | ENA

Project description:Coastal Lagoon monitoring through eDNA Metabarcoding

| PRJNA836411 | ENA

Project description:Whispers of Wildfire - Using eDNA Metabarcoding to Decipher Effects of Megafires on Watershed Biodiversity

| PRJNA1302509 | ENA

Specialisation events of fungal metacommunities exposed to a persistent organic pollutant are suggestive of augmented pathogenic potential

Project description:The impacts of man-made chemicals, in particular of persistent organic pollutants, are multifactorial as they may affect the integrity of ecosystems, alter biodiversity and hinder the health of most organisms. We have demonstrated that the belowground mycobiota of forest soils acts as a buffer against the pollution provoked by the biocide pentachlorophenol. However the trade-offs of the mitigation of the pollutant remain cryptic. To address this question we scrutinised the key changing aspects of a metacommunity of fungi when confronted (or not) with the biocide, comprising taxonomic and functional levels, as well as the identification of the major pollutant degraders within the metacommunity. Exposure to the biocide led to alterations in the metacommunity composition and functioning, many of which were not fully alleviated when most of the biocide was degraded, especially the dysregulation of the carbon and nitrogen metabolisms. The last is possibly linked to the higher pathogenic potential of the metacommunity after exposure to the biocide, supported by the secretion of proteins related to pathogenicity and reduced susceptibility to a standard fungicide. Our findings provide additional evidence for the silent risks of environmental pollution, particularly as it may favour the development of pathogenic trade-offs in fungi, which may impose serious threats to animals and plant hosts.

2018-11-28 | PXD009798 | Pride

seawater metagenome

Project description:CREST metabarcoding approach to biodiversity monitoring of fishes

| PRJDB3526 | ENA

Project description:Evaluating an autonomous eDNA sampler for monitoring marine biodiversity

| PRJNA1139183 | ENA

Project description:eDNA metabarcoding as a tool for estuary monitoring

| PRJNA627491 | ENA

Project description:Biodiversity assessment of coastal lagoon through eDNA metabarcoding

| PRJNA549294 | ENA