Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Effects of noc2l-deficiency in gene expression at 24, 36 and 48 hpf zebrafish embyos.

ABSTRACT: Effects of noc2l-deficiency in gene expression at 24, 36 and 48 hpf zebrafish embyos.

PROVIDER: PRJNA1242190 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32862900.fastq.gz	Fastqsanger.gz
	SRR32862901.fastq.gz	Fastqsanger.gz
	SRR32862902.fastq.gz	Fastqsanger.gz
	SRR32862903.fastq.gz	Fastqsanger.gz
	SRR32862904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Zebrafish transcriptomics in 24 and 36 hpf embryos after knockdown of glucocorticoid receptor translation

2013-08-28 | GSE50376 | GEO

WT vs MO-grnA injected: 16, 24, 48, 72 hpf trunk region of zebrafish embryos

Project description:Transcriptional profiling of zebrafish embryo comparing wild type untreated embryos with embryos injected with morpholino of zf-grna. This assay is used for determination of expression profiling of trunk muscle at 16, 24, 48, 72 hpf under GRN-A deficiency.

2013-06-01 | GSE38441 | GEO

Zebrafish transcriptomics in 24 and 36 hpf embryos after knockdown of glucocorticoid receptor translation

Project description:To further characterize the roles of cortisol signaling via the glucocorticoid receptor (GR) in developing zebrafish, we have used morpholino oligonucleotides to knockdown GR protein translation and measured gene expression in RNA extracted from 24 and 36 hours post fertilization (hpf) embryos. The GR morpholino was characterized previously in Nesan et al., 2012, Endocrinology 181, 35-44) Single-cell zebrafish embryos were microinjected with either active morpholino or mispair control. Embryos were frozen at 24 and 36 hpf and total RNA extracted for microarray analysis. Three independent replicates (different breeding events on separate days) were performed for each treatment per timepoint.

2013-08-28 | E-GEOD-50376 | biostudies-arrayexpress

WT vs MO-grnA injected: 16, 24, 48, 72 hpf trunk region of zebrafish embryos

2013-06-01 | E-GEOD-38441 | biostudies-arrayexpress

Zebrafish whole embryos at 36 hpf treated with DMSO or 5uM 11,12-EET

Project description:In our previous study, we found zebrafish embryos treated with 5uM 11,12-EET (epoxyeicosatrienoic acid) had increased stem cell marker, runx1, expression in the AGM. EET also induced ectopic runx1 expression in the tail. To systematically study how EET regulates gene expression, we performed microarray analysis on EET-treated embryos. Zebrafish whole embryos were synchronized at fertilization. Embryos were grown at 28 degree overnight. 25 embryos per group were treated with DMSO or 5uM 11,12-EET starting from 24 hpf (hour post fertilization) until 36 hpf at 28 degree. The triplicates were from three different clutches of embryos, and split into DMSO v.s. EET for each clutch.

2012-07-28 | GSE39707 | GEO

TCDD exposure in control and wfikkn1mutant zebrafish at 48 hpf

Project description:This experiment investigates the role of a novel AHR-regulated gene on the global transcriptome in 48 hpf zebrafish exposed to 0.1% DMSO or 1 ng/mL TCDD.

2021-04-21 | GSE172418 | GEO

Effects of noc2l-deficiency in gene expression at 24, 36 and 48 hpf zebrafish embyos.

Project description:To solve the cause of noc2l mutant abnormal formation, we performed time-course individual RNA-Seq.

2025-03-27 | GSE292936 | GEO

Zebrafish whole embryos at 36 hpf treated with DMSO or 5uM 11,12-EET

2012-07-27 | E-GEOD-39707 | biostudies-arrayexpress

Expression data from 48 hpf WT and mne mutant zebrafish

Project description:We sought to identify new factors important for myeloid development. From a forward genetic screen in zebrafish we identified the transciptional repressor Zbtb11. To understand pathways regulated by Zbtb11 we profiled gene expression in 48 hpf WT and mne mutant zebrafish. We identified TP53 as a significantly upregulated gene in mne compared to WT.

2017-04-28 | GSE94532 | GEO

Single-cell transcriptomic analysis of 36 hpf Zebrafish etv2 and jam2b positive cells

Project description:We performed single-cell RNAseq analysis of FACs sorted etv2 and jam2b psoitive cells from etv2Gt(2A-Venus) ; jam2bGt(2A-Gal4);UAS:NTR-mCherry zebrafish embryos at 36 hpf using 10x Genomics' Chromium platform. 18 distinct cell populations were identified including vascular endothelial cells and LPM cells.

2021-07-13 | GSE179926 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data