Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SP5 and SP8 transcription factors drive primary cilia formation in early embryo [scRNA-seq]

ABSTRACT: SP5 and SP8 transcription factors drive primary cilia formation in early embryo [scRNA-seq]

PROVIDER: PRJNA1247281 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR32999043.fastq.gz	Fastqsanger.gz
	SRR32999045.fastq.gz	Fastqsanger.gz
	SRR32999046.fastq.gz	Fastqsanger.gz
	SRR32999048.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

SP5 and SP8 transcription factors drive primary cilia formation in early embryo

Project description:Primary cilia play critical roles in sensory and signaling functions, and their dysregulation is associated with developmental abnormalities and multi-organ diseases. Despite their importance, the transcriptional regulation of primary cilia genes is unclear. Here, we employed transcriptome and mouse genetic tools to identify a master regulator of primary cilia genes. By comparing ciliated and non-ciliated cells in the early embryo using scRNA-seq and ChIP-seq, we uncovered that a wide spectrum of primary cilia genes are upregulated in ciliated cells and that SP5/8 within the SP/KLF family of transcription factors bind a core set of cilia genes. Loss- and gain-of-function assays in mouse embryos and embryonic stem cells demonstrate Sp5/8, are required for the initial formation of primary cilia in all embryonic cell types. Moreover, Sp5/8 loss compromises the formation of the more specialized motile cilia present in the embryonic node. Finally, misexpression of SP8 is sufficient to induce primary cilia formation in two unciliated cell types. Our findings demonstrate that SP5/8 are essential for cilia initiation in the embryo and sufficient to drive cilia formation in unciliated cells.

2025-06-25 | GSE274844 | GEO

SP5 and SP8 transcription factors drive primary cilia formation in early embryo [scRNA-seq]

2025-06-25 | GSE293888 | GEO

SP5 and SP8 transcription factors drive primary cilia formation in the early embryo [ChIP-seq]

2025-06-25 | GSE273920 | GEO

SP5 and SP8 transcription factors drive primary cilia formation in the early embryo [ATAC-seq]

Project description:Primary cilia play critical roles in sensory and signaling functions, and their dysregulation is associated with developmental abnormalities and multi-organ diseases1,2. Despite their importance, the transcriptional regulation of primary cilia genes is unclear. Here, we employed transcriptome and mouse genetic tools to identify a master regulator of primary cilia genes. By comparing ciliated and non-ciliated cells in the early embryo using scRNA-seq and ChIP-seq, we uncovered that a wide spectrum of primary cilia genes are upregulated in ciliated cells and that SP5/8 within the SP/KLF family of transcription factors bind a core set of cilia genes. Loss- and gain-of-function assays in mouse embryos and embryonic stem cells demonstrate Sp5/8, are required for the initial formation of primary cilia in all embryonic cell types. Moreover, Sp5/8 loss compromises the formation of the more specialized motile cilia present in the embryonic node. Finally, misexpression of SP8 is sufficient to induce primary cilia formation in two unciliated cell types. Our findings demonstrate that SP5/8 are essential for cilia initiation in the embryo and sufficient to drive cilia formation in unciliated cells.

2025-06-25 | GSE273919 | GEO

SP5 and SP8 transcription factors drive primary cilia formation in early embryo

Project description:SP5 and SP8 transcription factors drive primary cilia formation in early embryo

| PRJNA1148170 | ENA

SP5 and SP8 transcription factors drive primary cilia formation in the early embryo [ChIP-seq]

Project description:SP5 and SP8 transcription factors drive primary cilia formation in the early embryo [ChIP-seq]

| PRJNA1144105 | ENA

SP5 and SP8 transcription factors drive primary cilia formation in the early embryo [ATAC-seq]

Project description:SP5 and SP8 transcription factors drive primary cilia formation in the early embryo [ATAC-seq]

| PRJNA1144103 | ENA

Cilia proteome isolated from the multi-ciliated cells of Xenopus laevis embryo epidermis

Project description:We characterized the cilia proteome isolated from the multi-ciliated cells of Xenopus laevis embryo epidermis.

2019-11-15 | PXD010722 | Pride

Sp5 and Sp8 recruit b-catenin to the Tcf1-Lef1 enhanceosome to activate Wnt target gene transcription

Project description:Sp5 and Sp8 recruit b-catenin to the Tcf1-Lef1 enhanceosome to activate Wnt target gene transcription

| PRJNA296048 | ENA

Determination of the Sp5 regulated transcriptome in differentiating ES cells

Project description:Sp5 is a target and critical transducer of the Wnt/beta-catenin signaling pathway and is essential for mesoderm differentiation in vertebrate embryos. We established a doxycycline inducible ES cell line to over-express Flag epitope-tagged Sp5 protein in differentiating ES cells which have the capacity to form mesoderm cells in vitro. The goal of this study was to identify the genes/gene networks regulated by Sp5 to understand how it regulates mesoderm differentiation by identifying important target genes which may mediate its activity. Total RNA was extracted from ES cells after 3 days of differentiating following F-Sp5 over-expression from day 2 to 3. We compared the transcriptome of differentially expressed genes between untreated (minus) and doxycycline treated (plus) ES cells to identify Sp5 regulated genes.

2016-04-01 | E-GEOD-73082 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data