Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aquatic metagenome

ABSTRACT: Planktonic microbial communities in relation to the European Mudminnow (Umbra krameri) Conservation Pilot Programme

PROVIDER: PRJNA1247923 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33020145_1.fastq.gz	Fastqsanger.gz
	SRR33020145_2.fastq.gz	Fastqsanger.gz
	SRR33020146_1.fastq.gz	Fastqsanger.gz
	SRR33020146_2.fastq.gz	Fastqsanger.gz
	SRR33020147_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

fUmbKra

Project description:Umbra krameri

| PRJEB85943 | ENA

fUmbKra5

Project description:Umbra krameri, genome assembly, fUmbKra5.

| PRJEB85937 | ENA

fUmbKra

Project description:Umbra krameri, genomic and transcriptomic data.

| PRJEB85936 | ENA

Project description:European ARMS programme (ARMS-MBON)

| PRJEB72316 | ENA

Relation between biofilm and virulence in Vibrio tapetis, a transcriptomic study

Project description:The aim of this study is to compare the transcriptomic profiles of V. tapetis in biofilm culture vs. In planktonic culture and to understand the relation between biofilm and virulence.

2019-01-01 | GSE120499 | GEO

microbial metaproteome from global ocean

Project description:This project contains metaproteome for marine planktonic communities including eukaryotes, bacteria, archaea and viruses

2023-03-08 | PXD034421 | Pride

Exploring the Functional Diversity and Metabolic Activities of the Human Gut Microbiome in Thai Adults in Response to a Prebiotic Diet

Project description:Exploring dietary methods to alter microbial communities and metabolic functions is becoming an increasingly fascinating strategy for improving health. Copra meal hydrolysate (CMH) is commonly used as a gut health supplement. However, the functional diversity and metabolic activities in gut microbiome in relation to CMH treatment remain largely unknown.

2024-12-11 | PXD052903 | JPOST Repository

Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 10987

Project description:Planktonic and biofilm cells of Bacillus cereus ATCC 14579 and ATCC 10987 were studied using microscopy and transcriptome analysis. By microscopy, clear differences could be observed between biofilm and planktonic cells as well as between the two strains. By using hierarchical clustering of the transcriptome data, little difference was observed between the biofilm cells of B. cereus ATCC 14579 and ATCC 10987. Different responses between biofilm and planktonic cells could be identified using transcriptome analysis. Biofilm formation seemed to cause a shift in metabolism with up- or down-regulation of genes involved in different metabolic pathways. Genes involved in motility were down-regulated. No clear up-regulation related to capsular or extracellular polysaccharides was observed. Sporulation was observed in biofilm cells using microscopy, which was corroborated with up-regulation of genes involved in sporulation in biofilm cells. The results obtained in this study provide insight in general and strain specific behavior of B. cereus cells in multicellular communities.

2015-10-10 | GSE24620 | GEO

Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 14579

2015-10-10 | GSE24619 | GEO

DNA Methylation Explains a Subset of Placental Gene Expression Differences Based on Ancestry and altitude

Project description:Investigation of how gene expression and epigenetics contribute to conservation of birth weight at high altitudes by examining mRNA and DNA methylation differences between placentas of indigenous Andeans and placentas of European descent residing at high and low altitude

2023-03-15 | GSE100988 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data