Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schaalia odontolytica strain:XH001

ABSTRACT: Identifying essential genes in Schaalia odontolytica using a transposon library

PROVIDER: PRJNA1249110 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33156507.fastq.gz	Fastqsanger.gz
	SRR33156508.fastq.gz	Fastqsanger.gz
	SRR33156509.fastq.gz	Fastqsanger.gz
	SRR33156510.fastq.gz	Fastqsanger.gz
	SRR33156511.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Schaalia odontolytica strain:KHUD_005

Project description:Schaalia odontolytica strain:KHUD_005 Genome sequencing

| PRJNA837368 | ENA

Schaalia odontolytica strain:KHUD_008

Project description:Schaalia odontolytica strain:KHUD_008 Genome sequencing

| PRJNA863379 | ENA

Schaalia odontolytica strain:XH001

Project description:Schaalia odontolytica strain:XH001 Genome sequencing and assembly

| PRJNA298751 | ENA

Schaalia odontolytica strain:17982

Project description:Schaalia odontolytica strain:17982 Genome sequencing and assembly

| PRJNA341372 | ENA

Schaalia odontolytica strain:LMG 18080

Project description:Schaalia odontolytica strain:LMG 18080 Genome sequencing

| PRJNA1009872 | ENA

Complete genome sequence of Schaalia odontolytica isolated from subgingival biofilm.

Project description:ObjectiveRecent advancements in genome-based taxonomic classification propose the reclassification of certain Actinomyces species into new genera, including Schaalia. Schaalia odontolytica, the type species within this genus, is frequently found in the human oral cavity and has been associated with actinomycotic lesions. Currently, only two complete genomes of S. odontolytica strains have been reported. Recognizing the limited research on subspecies-level variation of S. odontolytica, we conducted genome sequencing of strain KHUD_008, isolated from a Korean periodontitis patient's subgingival biofilm. Additionally, we performed a comparative genome analysis using previously sequenced genomes of strain XH001 and strain FDAARGOS_732, both derived from the human oral cavity.Data descriptionPacific Biosciences Sequel II sequencing generated 15,904 and 76,557 raw sequencing sub-reads, which were integrated to assemble the de novo genome using the Microbial Genome Analysis pipeline in the Single-Molecule Real-Time Analysis. The genome assembly completeness, assessed by Benchmarking Universal Single-Copy Orthologs, reached 99.2%. The genome is 2,389,595 bp with a GC content of 66.37%, and contains 2,002 protein-coding genes, 9 rRNAs, and 48 tRNA. Comparative analysis with two previously sequenced strains revealed many strain-specific genes in KHUD_008, primarily related to envelope biogenesis and replication/recombination/repair processes.

| S-EPMC10854015 | biostudies-literature

Schaalia

Project description:Schaalia sp. overview

| PRJNA649039 | ENA

Schaalia odontolytica

Project description:Normal oral and gastrointestinal bacterium

| PRJNA34981 | ENA

Schaalia odontolytica

Project description:CRC Isolates Comparative Genomics

| PRJDB20546 | ENA

Schaalia odontolytica C702

Project description:Reference genome for the Human Microbiome Project