Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing of Blumea balsamifera drought stress

PROVIDER: PRJNA1252783 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33218345_1.fastq.gz	Fastqsanger.gz
	SRR33218345_2.fastq.gz	Fastqsanger.gz
	SRR33218346_1.fastq.gz	Fastqsanger.gz
	SRR33218346_2.fastq.gz	Fastqsanger.gz
	SRR33218347_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Blumea balsamifera of protemics

Project description:Drought restricts plant growth and agricultural production. As an important medicinal plant, Blumea balsamifera is sensitive to water, but there is still a lack of systematic research on its drought response mechanism.

2025-07-14 | PXD063289 | Pride

Project description:Transcriptome of Blumea balsamifera

| PRJNA950886 | ENA

Blumea balsamifera

Project description:Blumea balsamifera overview

| PRJNA1059714 | ENA

Blumea balsamifera

Project description:Blumea balsamifera Genome sequencing and assembly

| PRJNA728381 | ENA

Blumea balsamifera cultivar:GB-1

Project description:Blumea balsamifera cultivar:GB-1 Transcriptome or Gene expression

| PRJNA668407 | ENA

Blumea balsamifera cultivar:GB-1

Project description:Blumea balsamifera cultivar:GB-1 Transcriptome or Gene expression

| PRJNA670314 | ENA

Molecular dissection of drought tolerance mechanisms in rice by comparative deep transcriptome sequencing

Project description:To dissect the molecular mechanisms underlying drought tolerance (DT) in rice, transcriptome differences of a DT introgression line H471, the DT donor P28 and the drought sensitive recurrent parent HHZ under drought stress were investigated using deep transcriptome sequencing. Results revealed a differential constitutive gene expression prior to stress and distinct global transcriptome reprogramming among three genotypes under time-series drought stress, consistent with their differential genotypes and DT phenotypes. DT introgression line H471, the DT donor P28 and the drought sensitive recurrent parent HHZ under drought stress were investigated using deep transcriptome sequencing.The drought stress treatment was started by withholding water at the tillering stage. The days were counted after the AWC in the soil reached 20% to allow drought measurements at precisely determined intervals, and the soil water content reached 15%, 10% and 7.5% after 1d, 3d and 4d drought treatment, respectively.Three top leaves for each sample were harvested for each genotype under 1d and 3d drought stress and control conditions. All samples were immediately frozen in liquid nitrogen and stored at -80C and then for transcriptome sequencing.

2014-12-30 | E-GEOD-57950 | biostudies-arrayexpress

Project description:Transcriptome of Leaves in Blumea balsamifera Treated with Different Nitrogen Regimes

| PRJNA1099649 | ENA

Molecular dissection of drought tolerance mechanisms in rice by comparative deep transcriptome sequencing

2014-12-30 | GSE57950 | GEO

Intraspecific variation in the Populus balsamifera drought transcriptome

Project description:Drought is a major limitation to the growth and productivity of trees in the ecologically and economically important genus Populus. The ability of Populus trees to contend with drought is a function of the responsiveness of their genome to this environmental insult, involving reconfiguration of the transcriptome to appropriately remodel growth, development and metabolism. The Populus drought transcriptome is shaped by interspecific genotypic variation, but the extent to which intraspecific variation shapes the drought transcriptome has not yet been examined. Here we test hypotheses aimed at examining the extent of intraspecific variation in the drought transcriptome. Transcriptome remodeling in response to water-deficit conditions was examined in six different Populus balsamifera L. genotypes using Affymetrix GeneChip technology. There were significant differences in the transcriptomes of the genotypes in response to water-deficit conditions; however, a common species-level response could also be identified across all individuals. Genotypes that had more similar drought-responsive transcriptomes also had fewer genotypic differences, as determined by microarray-derived single feature polymorphism (SFP) analysis, suggesting that responses may be conserved across individuals that share a greater degree of genotypic similarity. This work highlights the fact that a core species-level response can be defined; however, the underpinning genotype-derived complexities of the drought response in Populus must be taken into consideration when defining both species- and genus-level responses.

2010-12-31 | GSE21171 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data