Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing of largemouth bass (Perca fluviatilis)

PROVIDER: PRJNA1254665 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33289328_1.fastq.gz	Fastqsanger.gz
	SRR33289328_2.fastq.gz	Fastqsanger.gz
	SRR33289329_1.fastq.gz	Fastqsanger.gz
	SRR33289329_2.fastq.gz	Fastqsanger.gz
	SRR33289330_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Liver transcriptome analysis of juvenile largemouth bass under lead exposure by RNA-seq

Project description:We sequenced mRNA from 9 liver samples of juvenile largemouth bass (Micropterus salmoides) taken from different lead concentration exposure treatment fish and control fish to investigate the transcriptome and comparative expression profiles of largemouth bass liver undergoing lead exposure.

2019-01-12 | GSE124986 | GEO

High contaminant loads in Lake Apopka mesocosms affect the ovarian transcriptome in largemouth bass

Project description:This SuperSeries is composed of the following subset Series: GSE38738: High contaminant loads in Lake Apopka mesocosms affect the ovarian transcriptome in largemouth bass [April] GSE38773: High contaminant loads in Lake Apopka mesocosms affect the ovarian transcriptome in largemouth bass [January] Refer to individual Series

2012-08-31 | E-GEOD-38774 | biostudies-arrayexpress

Perca fluviatilis

Project description:Perca fluviatilis Transcriptome

| PRJNA256973 | ENA

The genomic effects of dieldrin in the hypothalamus of largemouth bass

Project description:This study examines the genomic effects of dieldrin in the hypothalamus of largemouth bass. Dieldrin is an insectide and organic pollutant. Largemouth bass fed diedrin for two months once a day ad libitium; 4 biological replicates for each group

2010-05-18 | E-GEOD-16402 | biostudies-arrayexpress

Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury

Project description:This SuperSeries is composed of the following subset Series: GSE38456: Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (lab study) GSE38458: Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (field study) Refer to individual Series

2012-08-31 | E-GEOD-38474 | biostudies-arrayexpress

Perca fluviatilis

Project description:Perca fluviatilis overview

| PRJNA291792 | ENA

The genomic effects of dieldrin in the hypothalamus of largemouth bass

Project description:This study examines the genomic effects of dieldrin in the hypothalamus of largemouth bass. Dieldrin is an insectide and organic pollutant.

2009-06-06 | GSE16402 | GEO

Perca fluviatilis

Project description:Perca fluviatilis Transcriptome or Gene expression

| PRJNA497742 | ENA

Project description:transcriptome sequencing of largemouth bass

| PRJNA714264 | ENA

Largemouth Bass E2 exposure

Project description:A novel custom microarray for largemouth bass (Micropterus salmoides) was designed from sequences obtained from a normalized cDNA library using the 454 Life Sciences GS-20 pyrosequencer. The GS-20 yielded in excess of 58 million bases of high-quality sequence. The sequence information was combined with 2,616 reads obtained by traditional suppressive subtractive hybridizations to derive a total of 31,391 unique sequences. Annotation and coding sequences were predicted for these transcripts where possible. 16,350 annotated transcripts were selected as target sequences for the design of the custom largemouth bass oligonucleotide microarray. The microarray was validated by examining the transcriptomic response in male largemouth bass exposed to 17 -oestradiol. Transcriptomic responses were assessed in liver and gonad, and indicated gene expression profiles typical of exposure to oestradiol. The results demonstrate the potential to rapidly create the tools necessary to assess large scale transcriptional responses in non-model species, paving the way for expanded impact of toxicogenomics in ecotoxicology. Keywords: E2 exposure, array validation

2008-08-01 | GSE10693 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data